Better to use DESeq2 for logFC calculation

TCP-Lab / transportome_profiler

Code to profile the expression of the transportome

GNU General Public License v3.0

0 stars 0 forks source link

Better to use DESeq2 for logFC calculation #3

Closed Feat-FeAR closed 1 year ago

Feat-FeAR commented 1 year ago

DESeq2 should be reintroduced as the only reliable method to compare counts across samples and groups. DESeq2 shrunken logFCs can be used to measure the effect size and provide a good ranking metric for pre-ranked GSEA.

MrHedmad commented 1 year ago

This was fixed a while ago. Closing.