Bad merging strategy in the assembly of count matrices

TCP-Lab / x.FASTQ

Bash wrapper modules for the remote analysis of RNA-Seq data, with persistency features.

MIT License

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Bad merging strategy in the assembly of count matrices #4

Closed Feat-FeAR closed 9 months ago

Feat-FeAR commented 9 months ago

In cc_assembler.R, this way of merging the column of counts with gene annotations causes an increase in the number of rows resulting in altered normalization of TPMs

https://github.com/TCP-Lab/x.FASTQ/blob/fd3b898c233ada5db5b90c037f96e25abd105403/cc_assembler.R#L182-L183

Feat-FeAR commented 9 months ago

Solved by commit 67e799696ffeb0c888114acfca2a132c81260364.