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TGAC / KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
http://www.earlham.ac.uk/kat-tools
GNU General Public License v3.0
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KAT gnuplot png error #143

Closed cement-head closed 4 years ago

cement-head commented 4 years ago

Installed KAT from conda/bioconda.

$ kat hist

gnuplot crashes when attempting to generate the png file, it's not available in the conda install of gnuplot.

suggested solutions?

cement-head commented 4 years ago

Any suggestions on attempting to fix this? I installed KAT via conda

Here's the error:

Bining kmers ... done.  Time taken: 11.3s

Merging counts ... done.  Time taken: 0.0s

Saving results to disk ... done.  Time taken: 0.0s

Creating plot ...
gnuplot> set terminal png large size 1024,1024
                      ^
         line 0: unknown or ambiguous terminal type; type just 'set terminal' for a list

 done.  Time taken: 1.1s

KAT HIST completed.
Total runtime: 1009.8s
cement-head commented 4 years ago

Nevermind, for some stupid reason, gnuplot wasn't updated, after update, it worked! $ conda update kat