Open Nina-pinheiro opened 3 years ago
I used kat's "comp" command to generate some graphics, but the color scale has low values. I would like to understand why these values are low. Anybody know?
Meu código mut_input_r1=ls -1 /Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/saidas/saidas_reads/out_mutado_pass_teste_${SGE_TASK_ID}/out_read_pass_mutado${SGE_TASK_ID}.fq data=/Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/saidas/saidas_reads/out_original_pass/out_read_pass_original.fq KMER=27 echo $KMER echo $mut_input_r1
ls -1 /Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/saidas/saidas_reads/out_mutado_pass_teste_${SGE_TASK_ID}/out_read_pass_mutado${SGE_TASK_ID}.fq
kat comp -H 1600000000 -I 1600000000 -n -m ${KMER} -o /Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/kat_kmers/saidas_kmers/kat_comp_pass_teste_hashnovo${KMER}_${SGE_TASK_ID}.fq $$D}.fq -t 4 $data $mut_input_r1
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I used kat's "comp" command to generate some graphics, but the color scale has low values. I would like to understand why these values are low. Anybody know?
Meu código mut_input_r1=
ls -1 /Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/saidas/saidas_reads/out_mutado_pass_teste_${SGE_TASK_ID}/out_read_pass_mutado${SGE_TASK_ID}.fqdata=/Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/saidas/saidas_reads/out_original_pass/out_read_pass_original.fq KMER=27 echo $KMER echo $mut_input_r1kat comp -H 1600000000 -I 1600000000 -n -m ${KMER} -o /Storage/data1/nina.pinheiro/iniciacao/HCKmer/projeto/kat_kmers/saidas_kmers/kat_comp_pass_teste_hashnovo${KMER}_${SGE_TASK_ID}.fq $$D}.fq -t 4 $data $mut_input_r1
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