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TGAC / KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
http://www.earlham.ac.uk/kat-tools
GNU General Public License v3.0
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Issue with compiling KAT from the source on HPC #161

Open AndriiTarieiev opened 2 years ago

AndriiTarieiev commented 2 years ago

Dear developers,

I have a problem with compiling KAT from the source on HPC under Scientific Linux 7.9. using instructions provided. The end of ./build_boost.sh output was the following:

...failed updating 18 targets... ...skipped 18 targets... ...updated 3635 targets...

I tried both icc and gcc compilers, but it did not make any difference. ./configure finished with the following:

   - Python V3.5+ - detected 3.9.  Plotting and downstream analysis enabled.
   - Sphinx V1.3+ - no.  Will not build docs. You can still find the documentation online at:

This was a bit surprising since I have sphinx and sphinx-doc installed.

When proceeding with make, the process crashes with the following errors:

make[2]: [Makefile:558: src/libkat_la-input_handler.lo] Error 1 make[2]: Leaving directory make[1]: [Makefile:475: all-recursive] Error 1 make[1]: Leaving directory make: * [Makefile:399: all] Error 2

I would appreciate it very much if you are able to suggest any solution to this issue.

Best regards, Andrii