tallnuttrbgv
commented
2 years ago Tried this:
edited build_boost.sh and replace '--prefix=build' with '--prefix=/g/data/nm31/bin/KAT' ./build_boost.sh
./autogen.sh
./configure --prefix=/g/data/nm31/bin/KAT
make
And get this error:
Making install in lib
make[1]: Entering directory '/g/data/nm31/bin/KAT/lib'
CXX src/libkat_la-matrix_metadata_extractor.lo
In file included from src/matrix_metadata_extractor.cc:23:
../lib/include/kat/matrix_metadata_extractor.hpp:24:10: fatal error: boost/filesystem/path.hpp: No such file or directory
24 | #include <boost/filesystem/path.hpp>
| ^~~~~~~
compilation terminated.
make[1]: [Makefile:551: src/libkat_la-matrix_metadata_extractor.lo] Error 1
make[1]: Leaving directory '/g/data/nm31/bin/KAT/lib'
make: [Makefile:475: install-recursive] Error 1
Hi,
unfortunately I cannot use conda on the HPC I am using. When compiling I get the following error:
/bin/ld: cannot find -lstdc++ collect2: error: ld returned 1 exit status make[4]: [Makefile:1156: bin/kat_jellyfish] Error 1 make[4]: Leaving directory '/g/data/nm31/bin/KAT/deps/jellyfish-2.2.0' make[3]: [Makefile:1867: all-recursive] Error 1 make[3]: Leaving directory '/g/data/nm31/bin/KAT/deps/jellyfish-2.2.0' make[2]: [Makefile:901: all] Error 2 make[2]: Leaving directory '/g/data/nm31/bin/KAT/deps/jellyfish-2.2.0' make[1]: [Makefile:475: all-recursive] Error 1 make[1]: Leaving directory '/g/data/nm31/bin/KAT' make: *** [Makefile:399: all] Error 2