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TGAC / KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
http://www.earlham.ac.uk/kat-tools
GNU General Public License v3.0
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numpy issue when make install #175

Closed rmormando closed 1 year ago

rmormando commented 1 year ago

I'm trying to download this tool on my server and I keep running into this error when I go to "make install"

Installed /home/ec2-user/anaconda3/lib/python3.9/site-packages/kat-2.4.2-py3.9.egg
Processing dependencies for kat==2.4.2
error: numpy 1.24.2 is installed but numpy<1.23.0,>=1.16.5 is required by {'scipy'}
make[3]: *** [install-exec-hook] Error 1
make[3]: Leaving directory `/home/ec2-user/KAT/scripts'
make[2]: *** [install-exec-am] Error 2
make[2]: Leaving directory `/home/ec2-user/KAT/scripts'
make[1]: *** [install-am] Error 2
make[1]: Leaving directory `/home/ec2-user/KAT/scripts'
make: *** [install-recursive] Error 1

I tried downgrading numpy with conda: conda install numpy=1.16.5

But it gave me an error and didnt chance it away from version 1.24.2

Does anyone have a solution for this?