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TGAC / KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
http://www.earlham.ac.uk/kat-tools
GNU General Public License v3.0
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TypeError: object of type 'NoneType' has no len() #178

Open xiekunwhy opened 1 year ago

xiekunwhy commented 1 year ago

Hi,

when running v2.4.2 (bioconda), I got following errors, do you know why?

/Bio/User/kxie/software/mambaforge/envs/kat/bin/kat gcp -o kat.gcp -t 10 -m 21 -p pdf Aeu.count.jf ERROR ----- Traceback (most recent call last): File "//Bio/User/kxie/software/mambaforge/envs/kat/share/kat/scripts/kat/distanalysis.py", line 440, in main a.plot(xmax=args.freq_cutoff, to_screen=args.plot, file_prefix=args.output_prefix) File "//Bio/User/kxie/software/mambaforge/envs/kat/share/kat/scripts/kat/distanalysis.py", line 132, in plot if len(self.cov_spectra.peaks) == 0: TypeError: object of type 'NoneType' has no len() Error: signal 11: Stack trace: /Bio/User/kxie/software/mambaforge/envs/kat/bin/kat(+0x8388c)[0x2aca2152f88c] /Bio/lib64/libc.so.6(+0x32660)[0x2aca220a0660] /Bio/lib64/libc.so.6(+0x790fd)[0x2aca220e70fd] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(PyObject_Free+0x196)[0x2aca21b42e46] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(+0x1da900)[0x2aca21bff900] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(+0x1b6869)[0x2aca21bdb869] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(+0x1da707)[0x2aca21bff707] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(+0x123538)[0x2aca21b48538] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(_PyGC_CollectNoFail+0x3e)[0x2aca21c0c77e] /Bio/User/kxie/software/mambaforge/envs/kat/bin/../lib/libpython3.9.so.1.0(Py_FinalizeEx+0x194)[0x2aca21c0afe4]

Best, Kun

praimondeau commented 5 months ago

Hi, I run into the same error. Have you figured out what is happening?