Running Data Preparation Code

[infusion-zero-edit]

Once all the .pdb files downloaded and then the post process is run it says "{file path} could not be parsed: Muscle could not be found in the path". Can you please help resolve this issue.

[kxz18]

Hi, did you run scripts/setup.sh first to create the right environment?

[infusion-zero-edit]

Yes have run that the conda env with name mean is created using env.yml file

[kxz18]

Could you please provide the traceback of the error?

[infusion-zero-edit]

100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 7152/7152 [04:19<00:00, 27.55it/s] number of downloaded entries: 6989 writing PDB files to summaries/pdb 6989it [00:04, 1498.85it/s] post processing 0%| | 0/6989 [00:00<?, ?it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/7up9.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7up9. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7upb.pdb could not be parsed: Muscle could not be found in the path /home/ec2-user/SageMaker/MEAN/summaries/pdb/7uop.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect /home/ec2-user/SageMaker/MEAN/summaries/pdb/7upd.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7upb. scheme imgt renumbering failed for 7uop. scheme imgt 0%| | 1/6989 [00:03<5:56:56, 3.06s/it]renumbering failed for 7upd. scheme imgt 0%| | 4/6989 [00:03<1:11:04, 1.64it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/7ys6.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7ys6. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/8d7e.pdb could not be parsed: Muscle could not be found in the path /home/ec2-user/SageMaker/MEAN/summaries/pdb/7upk.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 8d7e. scheme imgt renumbering failed for 7upk. scheme imgt 0%| | 6/6989 [00:05<1:42:17, 1.14it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8cxr.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 8cxr. scheme imgt 0%|▏ | 7/6989 [00:06<1:45:40, 1.10it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8f8v.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 8f8v. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/8dk6.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 8dk6. scheme imgt 0%|▏ | 9/6989 [00:07<1:14:53, 1.55it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8f0l.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 8f0l. scheme imgt 0%|▏ | 10/6989 [00:07<1:18:43, 1.48it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8f8x.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 8f8x. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/8f8w.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 8f8w. scheme imgt 0%|▏ | 12/6989 [00:09<1:19:22, 1.46it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8fmz.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 8fmz. scheme imgt 0%|▎ | 14/6989 [00:09<54:04, 2.15it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8fn0.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 8fn0. scheme imgt 0%|▎ | 15/6989 [00:10<59:28, 1.95it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8fn1.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 8fn1. scheme imgt 0%|▎ | 16/6989 [00:10<1:06:44, 1.74it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/8il3.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 8il3. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/6fe4.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 6fe4. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/8i2g.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect /home/ec2-user/SageMaker/MEAN/summaries/pdb/7jmo.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 7jmo. scheme imgt renumbering failed for 8i2g. scheme imgt 0%|▎ | 17/6989 [00:12<1:37:07, 1.20it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/6ch9.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 6ch9. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/4o51.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 4o51. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7sgf.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7sgf. scheme imgt 0%|▎ | 21/6989 [00:16<1:42:39, 1.13it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/7mtb.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7mtb. scheme imgt 0%|▍ | 24/6989 [00:17<1:14:34, 1.56it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/5l21.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 5l21. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7orb.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 7orb. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7n0h.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7n0h. scheme imgt 0%|▍ | 25/6989 [00:20<1:58:15, 1.02s/it]/home/ec2-user/SageMaker/MEAN/summaries/pdb/7q1u.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7q1u. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/6cw2.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 6cw2. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/5w08.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 5w08. scheme imgt 0%|▍ | 27/6989 [00:23<2:13:34, 1.15s/it]/home/ec2-user/SageMaker/MEAN/summaries/pdb/5i1e.pdb could not be parsed: Muscle could not be found in the path /home/ec2-user/SageMaker/MEAN/summaries/pdb/7a17.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 5i1e. scheme imgt renumbering failed for 7a17. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7lg6.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7lg6. scheme imgt 0%|▌ | 30/6989 [00:25<1:53:19, 1.02it/s]/home/ec2-user/SageMaker/MEAN/summaries/pdb/3eo0.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 3eo0. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/6p67.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 6p67. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/6njm.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 6njm. scheme imgt 0%|▌ | 32/6989 [00:28<2:20:19, 1.21s/it]/home/ec2-user/SageMaker/MEAN/summaries/pdb/6x02.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 6x02. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7t6s.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7t6s. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/4ffv.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 4ffv. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/6zdh.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 6zdh. scheme imgt 1%|▋ | 37/6989 [00:33<1:59:12, 1.03s/it]/home/ec2-user/SageMaker/MEAN/summaries/pdb/5cjs.pdb could not be parsed: Muscle could not be found in the path renumbering failed for 5cjs. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7wwj.pdb could not be parsed: Muscle was not found and there are suspected missing residues. Numbering could be incorrect renumbering failed for 7wwj. scheme imgt /home/ec2-user/SageMaker/MEAN/summaries/pdb/7c

[infusion-zero-edit]

after successfully downloading that, in post process step it is giving the same error for all of the entries

[kxz18]

Did you pass --pre_numbered when running download.py? It looks that the post process is renumbering the pdbs, which is unnecessary because SAbDab has already renumbered them. Also, I think this error might be related to the anarci packages used by the renumbering program, so installing anarci with conda might solve the problem.

[infusion-zero-edit]

parsing pdb failed for 7tas. reason: Not ['CYS'] at 23 parsing pdb failed for 7e14. reason: Not ['CYS'] at 23 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 6989/6989 [17:54<00:00, 6.50it/s] number of valid entries: 47 Only has heavy_chain, 3, examples: ['7omn', '5yax', '7ooi'] Only has heavy_chain, antigen_chains, 6, examples: ['6i8g', '4c57', '6i8h', '4c58', '4c59'] Only has heavy_chain, light_chain, 9, examples: ['6rlm', '6wyr', '4zd3', '5it2', '5ihz'] Only has heavy_chain, light_chain, antigen_chains, 29, examples: ['7kxk', '5ifj', '6xp6', '7klh', '7uz4']

HAve installed anarci package, but now there is some other error occuring for most of the entries like for example "parsing pdb failed for 7e14. reason: Not ['CYS'] at 23". Out of 7152 it gives only 47 valid entries which is not correct. Let me know what i am missing here

[infusion-zero-edit]

I am passing --pre_numbered in the download script.

[infusion-zero-edit]

Out of 7152, there are 6989 which are successfully downloaded. out if which only 47 entries it is showing valid which is incorrect

[kxz18]

Could you provide the full command you run with download.py? I'm trying to reproduce this error.

[infusion-zero-edit]

I am running this script:

bash scripts/prepare_data_kfold.sh summaries/sabdab_summary.tsv all_structures/imgt

where the following commands are used to download

!/bin/bash

PROJ_FOLDER=$(cd "$(dirname "$0")";cd ..;pwd) echo "Locate project at ${PROJ_FOLDER}"

add python path

export PYTHONPATH=$PYTHONPATH:${PROJ_FOLDER} cd ${PROJ_FOLDER}

if [ $# != 2 ]; then echo "Usage: bash $0 /path/to/summary /directory/to/pdb" exit 1; fi

path to summary file of SAbDab

SUMMARY=$1

path to structure folder of SAbDab (our paper use IMGT numbering)

PDB_DIR=$2

extract data directory

DATA_DIR=$(dirname ${SUMMARY}) echo "Summary file at ${SUMMARY}. PDB folder at ${PDB_DIR}. Data working directory at ${DATA_DIR}"

ALL=${DATA_DIR}/sabdab_all.json

download data

python -m data.download \ --summary ${SUMMARY} \ --pdb_dir ${PDB_DIR} \ --fout ${ALL} \ --type sabdab \ --numbering imgt \ --pre_numbered \ --n_cpu 4

[kxz18]

Hi, I have run this command but didn't encounter this problem. However, I noticed that the number of entries is different from which was provided in this repo, and that the downloading process took 4 times longer than my run. So maybe I need further information. May I ask how you got the summary file and the corresponding pdb database?

[infusion-zero-edit]

As written in your github repo "_We have provided the summary data used in our paper from SAbDab, RAbD, SKEMPI_V2 in the summaries folder, please download all structure data from the download page of SAbDab. Since the SAbDab is updating on a weekly basis, you may also download the newest summary file from its official website. The following instructions will suppose the structure data renumbered by imgt is located at the folder allstructures/imgt."

So i downloaded the latest file from SabDab

[kxz18]

Emmm, this is a bit weird, because if the correct database is provided and --pre_numbered is passed, then the post process shouldn't enter the renumber branch (line 246 in download.py). Is it because the most of the pdb data is downloaded from pdb server instead of from the SAbDab provided locally?

[kxz18]

I just downloaded the newest version of SAbDab, and the first part of logs is as follows:

PDB file already renumbered with scheme imgt downloading raw files 11%|███████▍ | 753/7152 [00:00<00:05, 1230.75it/s] 6TNP not found in > ../tmp_mean_data/all_structures/imgt/, try fetching from remote server fetched 100%|██████████████████████████████████████████████████████████████████████| > 7152/7152 [00:03<00:00, 1939.55it/s] number of downloaded entries: 7152

It seems that only 6TNP is not included in the pdb database of SAbDab, which is not consistent with your logs. Did you provide the correct path to the pdb database in ${PDB_DIR}?

[infusion-zero-edit]

Locate project at /home/ec2-user/SageMaker/MEAN Summary file at summaries/sabdab_summary.tsv. PDB folder at summaries/pdb. Data working directory at summaries download sabdab from summary file summaries/sabdab_summary.tsv using local PDB files: summaries/pdb PDB file already renumbered with scheme imgt

My logs are these i am not pre-downloading any sabdab pdb file code downloads that in the given path i am only using summary file which is pre-downloaded from SabDab

[kxz18]

Oh in that case I know the problem. You need to further download the PDB database annotated by SAbDab (this link). The database is downloaded as compressed file in zip format. After decompressing it, you will get three subfolders: raw, imgt, chothia. You need to provide the path to the imgt subfolder to the second argument of scripts/prepare_data_kfold.sh.

[infusion-zero-edit]

okay thanks

[infusion-zero-edit]

Locate project at /home/ec2-user/SageMaker/MEAN Summary file at summaries/sabdab_summary.tsv. PDB folder at summaries/all_structures/imgt. Data working directory at summaries download sabdab from summary file summaries/sabdab_summary.tsv using local PDB files: summaries/all_structures/imgt PDB file already renumbered with scheme imgt downloading raw files 11%|█████████████▎ | 773/7152 [00:00<00:03, 1869.12it/s]6TNP not found in summaries/all_structures/imgt, try fetching from remote server fetched 100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 7152/7152 [00:02<00:00, 2778.65it/s] number of downloaded entries: 7152 writing PDB files to summaries/pdb 7152it [00:03, 1986.08it/s] post processing 1%|█▌ | 86/7152 [00:20<34:46, 3.39it/s]

Its working thanks for your help

[jinzhuwei]

当我运行bash scripts/prepare_data_kfold.sh summaries/sabdab_summary.tsv all_structures/imgt，发生如下报错，请问该如何解决

(mean) sh-5.0$ bash scripts/prepare_data_kfold.sh summaries/sabdab_summary.tsv all_structures/imgt Locate project at /storage/weijinzhu/MEAN-main Summary file at summaries/sabdab_summary.tsv. PDB folder at all_structures/imgt. Data working directory at summaries Traceback (most recent call last): File "/storage/weijinzhu/.conda/envs/mean/lib/python3.8/runpy.py", line 185, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/storage/weijinzhu/.conda/envs/mean/lib/python3.8/runpy.py", line 111, in _get_module_details import(pkg_name) File "/storage/weijinzhu/MEAN-main/data/init.py", line 3, in from .pdb_utils import VOCAB, Protein, AAComplex File "/storage/weijinzhu/MEAN-main/data/pdb_utils.py", line 20, in from utils.logger import print_log ModuleNotFoundError: No module named 'utils' Processing cdrh1 Traceback (most recent call last): File "data/split.py", line 232, in main(parse()) File "data/split.py", line 72, in main items = load_file(args.data) File "data/split.py", line 37, in load_file with open(fpath, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/sabdab_all.json' 2023-07-22 17:48:03::WARN::Faild to load file summaries/cdrh1/fold_0/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_0/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_0/test.json' 2023-07-22 17:48:04::WARN::Faild to load file summaries/cdrh1/fold_0/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_0/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_0/valid.json' 2023-07-22 17:48:04::WARN::Faild to load file summaries/cdrh1/fold_0/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_0/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_0/train.json' 2023-07-22 17:48:05::WARN::Faild to load file summaries/cdrh1/fold_1/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_1/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_1/test.json' 2023-07-22 17:48:06::WARN::Faild to load file summaries/cdrh1/fold_1/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_1/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_1/valid.json' 2023-07-22 17:48:07::WARN::Faild to load file summaries/cdrh1/fold_1/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_1/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_1/train.json' 2023-07-22 17:48:08::WARN::Faild to load file summaries/cdrh1/fold_2/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_2/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_2/test.json' 2023-07-22 17:48:09::WARN::Faild to load file summaries/cdrh1/fold_2/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_2/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_2/valid.json' 2023-07-22 17:48:10::WARN::Faild to load file summaries/cdrh1/fold_2/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_2/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_2/train.json' 2023-07-22 17:48:10::WARN::Faild to load file summaries/cdrh1/fold_3/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_3/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_3/test.json' 2023-07-22 17:48:11::WARN::Faild to load file summaries/cdrh1/fold_3/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_3/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_3/valid.json' 2023-07-22 17:48:12::WARN::Faild to load file summaries/cdrh1/fold_3/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_3/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_3/train.json' 2023-07-22 17:48:13::WARN::Faild to load file summaries/cdrh1/fold_4/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_4/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_4/test.json' 2023-07-22 17:48:14::WARN::Faild to load file summaries/cdrh1/fold_4/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_4/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_4/valid.json' 2023-07-22 17:48:15::WARN::Faild to load file summaries/cdrh1/fold_4/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_4/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_4/train.json' 2023-07-22 17:48:16::WARN::Faild to load file summaries/cdrh1/fold_5/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_5/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_5/test.json' 2023-07-22 17:48:16::WARN::Faild to load file summaries/cdrh1/fold_5/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_5/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_5/valid.json' 2023-07-22 17:48:17::WARN::Faild to load file summaries/cdrh1/fold_5/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_5/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_5/train.json' 2023-07-22 17:48:18::WARN::Faild to load file summaries/cdrh1/fold_6/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_6/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_6/test.json' 2023-07-22 17:48:19::WARN::Faild to load file summaries/cdrh1/fold_6/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_6/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_6/valid.json' 2023-07-22 17:48:20::WARN::Faild to load file summaries/cdrh1/fold_6/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_6/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_6/train.json' 2023-07-22 17:48:21::WARN::Faild to load file summaries/cdrh1/fold_7/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_7/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_7/test.json' 2023-07-22 17:48:21::WARN::Faild to load file summaries/cdrh1/fold_7/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_7/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_7/valid.json' 2023-07-22 17:48:22::WARN::Faild to load file summaries/cdrh1/fold_7/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_7/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_7/train.json' 2023-07-22 17:48:23::WARN::Faild to load file summaries/cdrh1/fold_8/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_8/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_8/test.json' 2023-07-22 17:48:24::WARN::Faild to load file summaries/cdrh1/fold_8/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_8/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_8/valid.json' 2023-07-22 17:48:25::WARN::Faild to load file summaries/cdrh1/fold_8/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_8/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_8/train.json' 2023-07-22 17:48:26::WARN::Faild to load file summaries/cdrh1/fold_9/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_9/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_9/test.json' 2023-07-22 17:48:27::WARN::Faild to load file summaries/cdrh1/fold_9/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_9/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_9/valid.json' 2023-07-22 17:48:27::WARN::Faild to load file summaries/cdrh1/fold_9/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_9/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh1/fold_9/train.json' Processing cdrh2 Traceback (most recent call last): File "data/split.py", line 232, in main(parse()) File "data/split.py", line 72, in main items = load_file(args.data) File "data/split.py", line 37, in load_file with open(fpath, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/sabdab_all.json' 2023-07-22 17:48:28::WARN::Faild to load file summaries/cdrh2/fold_0/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_0/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_0/test.json' 2023-07-22 17:48:29::WARN::Faild to load file summaries/cdrh2/fold_0/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_0/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_0/valid.json' 2023-07-22 17:48:30::WARN::Faild to load file summaries/cdrh2/fold_0/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_0/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_0/train.json' 2023-07-22 17:48:31::WARN::Faild to load file summaries/cdrh2/fold_1/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_1/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_1/test.json' 2023-07-22 17:48:32::WARN::Faild to load file summaries/cdrh2/fold_1/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_1/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_1/valid.json' 2023-07-22 17:48:33::WARN::Faild to load file summaries/cdrh2/fold_1/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_1/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_1/train.json' 2023-07-22 17:48:33::WARN::Faild to load file summaries/cdrh2/fold_2/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_2/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_2/test.json' 2023-07-22 17:48:34::WARN::Faild to load file summaries/cdrh2/fold_2/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_2/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_2/valid.json' 2023-07-22 17:48:35::WARN::Faild to load file summaries/cdrh2/fold_2/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_2/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_2/train.json' 2023-07-22 17:48:36::WARN::Faild to load file summaries/cdrh2/fold_3/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_3/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_3/test.json' 2023-07-22 17:48:37::WARN::Faild to load file summaries/cdrh2/fold_3/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_3/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_3/valid.json' 2023-07-22 17:48:38::WARN::Faild to load file summaries/cdrh2/fold_3/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_3/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_3/train.json' 2023-07-22 17:48:38::WARN::Faild to load file summaries/cdrh2/fold_4/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_4/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_4/test.json' 2023-07-22 17:48:39::WARN::Faild to load file summaries/cdrh2/fold_4/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_4/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_4/valid.json' 2023-07-22 17:48:40::WARN::Faild to load file summaries/cdrh2/fold_4/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_4/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_4/train.json' 2023-07-22 17:48:41::WARN::Faild to load file summaries/cdrh2/fold_5/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_5/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_5/test.json' 2023-07-22 17:48:42::WARN::Faild to load file summaries/cdrh2/fold_5/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_5/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_5/valid.json' 2023-07-22 17:48:43::WARN::Faild to load file summaries/cdrh2/fold_5/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_5/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_5/train.json' 2023-07-22 17:48:44::WARN::Faild to load file summaries/cdrh2/fold_6/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_6/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_6/test.json' 2023-07-22 17:48:44::WARN::Faild to load file summaries/cdrh2/fold_6/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_6/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_6/valid.json' 2023-07-22 17:48:45::WARN::Faild to load file summaries/cdrh2/fold_6/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_6/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_6/train.json' 2023-07-22 17:48:46::WARN::Faild to load file summaries/cdrh2/fold_7/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_7/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_7/test.json' 2023-07-22 17:48:47::WARN::Faild to load file summaries/cdrh2/fold_7/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_7/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_7/valid.json' 2023-07-22 17:48:48::WARN::Faild to load file summaries/cdrh2/fold_7/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_7/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_7/train.json' 2023-07-22 17:48:49::WARN::Faild to load file summaries/cdrh2/fold_8/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_8/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_8/test.json' 2023-07-22 17:48:49::WARN::Faild to load file summaries/cdrh2/fold_8/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_8/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_8/valid.json' 2023-07-22 17:48:50::WARN::Faild to load file summaries/cdrh2/fold_8/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_8/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_8/train.json' 2023-07-22 17:48:51::WARN::Faild to load file summaries/cdrh2/fold_9/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_9/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_9/test.json' 2023-07-22 17:48:52::WARN::Faild to load file summaries/cdrh2/fold_9/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_9/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_9/valid.json' 2023-07-22 17:48:53::WARN::Faild to load file summaries/cdrh2/fold_9/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_9/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh2/fold_9/train.json' Processing cdrh3 Traceback (most recent call last): File "data/split.py", line 232, in main(parse()) File "data/split.py", line 72, in main items = load_file(args.data) File "data/split.py", line 37, in load_file with open(fpath, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/sabdab_all.json' 2023-07-22 17:48:54::WARN::Faild to load file summaries/cdrh3/fold_0/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_0/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_0/test.json' 2023-07-22 17:48:55::WARN::Faild to load file summaries/cdrh3/fold_0/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_0/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_0/valid.json' 2023-07-22 17:48:56::WARN::Faild to load file summaries/cdrh3/fold_0/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_0/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_0/train.json' 2023-07-22 17:48:56::WARN::Faild to load file summaries/cdrh3/fold_1/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_1/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_1/test.json' 2023-07-22 17:48:57::WARN::Faild to load file summaries/cdrh3/fold_1/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_1/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_1/valid.json' 2023-07-22 17:48:58::WARN::Faild to load file summaries/cdrh3/fold_1/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_1/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_1/train.json' 2023-07-22 17:48:59::WARN::Faild to load file summaries/cdrh3/fold_2/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_2/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_2/test.json' 2023-07-22 17:49:00::WARN::Faild to load file summaries/cdrh3/fold_2/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_2/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_2/valid.json' 2023-07-22 17:49:01::WARN::Faild to load file summaries/cdrh3/fold_2/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_2/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_2/train.json' 2023-07-22 17:49:01::WARN::Faild to load file summaries/cdrh3/fold_3/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_3/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_3/test.json' 2023-07-22 17:49:02::WARN::Faild to load file summaries/cdrh3/fold_3/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_3/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_3/valid.json' 2023-07-22 17:49:03::WARN::Faild to load file summaries/cdrh3/fold_3/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_3/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_3/train.json' 2023-07-22 17:49:04::WARN::Faild to load file summaries/cdrh3/fold_4/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_4/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_4/test.json' 2023-07-22 17:49:05::WARN::Faild to load file summaries/cdrh3/fold_4/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_4/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_4/valid.json' 2023-07-22 17:49:06::WARN::Faild to load file summaries/cdrh3/fold_4/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_4/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_4/train.json' 2023-07-22 17:49:06::WARN::Faild to load file summaries/cdrh3/fold_5/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_5/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_5/test.json' 2023-07-22 17:49:07::WARN::Faild to load file summaries/cdrh3/fold_5/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_5/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_5/valid.json' 2023-07-22 17:49:08::WARN::Faild to load file summaries/cdrh3/fold_5/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_5/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_5/train.json' 2023-07-22 17:49:09::WARN::Faild to load file summaries/cdrh3/fold_6/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_6/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_6/test.json' 2023-07-22 17:49:10::WARN::Faild to load file summaries/cdrh3/fold_6/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_6/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_6/valid.json' 2023-07-22 17:49:11::WARN::Faild to load file summaries/cdrh3/fold_6/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_6/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_6/train.json' 2023-07-22 17:49:12::WARN::Faild to load file summaries/cdrh3/fold_7/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_7/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_7/test.json' 2023-07-22 17:49:12::WARN::Faild to load file summaries/cdrh3/fold_7/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_7/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_7/valid.json' 2023-07-22 17:49:13::WARN::Faild to load file summaries/cdrh3/fold_7/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_7/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_7/train.json' 2023-07-22 17:49:14::WARN::Faild to load file summaries/cdrh3/fold_8/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_8/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_8/test.json' 2023-07-22 17:49:15::WARN::Faild to load file summaries/cdrh3/fold_8/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_8/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_8/valid.json' 2023-07-22 17:49:16::WARN::Faild to load file summaries/cdrh3/fold_8/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_8/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_8/train.json' 2023-07-22 17:49:17::WARN::Faild to load file summaries/cdrh3/fold_9/test_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_9/test_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_9/test.json' 2023-07-22 17:49:18::WARN::Faild to load file summaries/cdrh3/fold_9/valid_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_9/valid_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_9/valid.json' 2023-07-22 17:49:18::WARN::Faild to load file summaries/cdrh3/fold_9/train_processed/_metainfo, error: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_9/train_processed/_metainfo' Traceback (most recent call last): File "data/dataset.py", line 303, in dataset = EquiAACDataset(args.dataset, args.save_dir, num_entry_per_file=-1) File "data/dataset.py", line 63, in init self.preprocess(file_path, save_dir, num_entry_per_file) File "data/dataset.py", line 135, in preprocess with open(file_path, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'summaries/cdrh3/fold_9/train.json'

[kxz18]

The initial error is "ModuleNotFoundError: No module named 'utils'". The folder utils should be at the root directory of this repo. Could you check if it still there in your cloned version?

[jinzhuwei]

I downloaded your GitHub archive directly, which contains all the code you shared。Below is the table of contents of the code.

[jinzhuwei]

请问上面的问题该如何解决，期待你的回复，谢谢

[kxz18]

按目前的报错信息我很难确定是什么原因。报错是"ModuleNotFoundError: No module named 'utils'"，但你下载的代码是完整的。同样的情况下我在多台机器上尝试均没有办法复现这个报错。如果你直接在项目根目录下运行python -m data.download是否会报这个错误呢？