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TIBCOSoftware / snappy-on-k8s

An Integrated and collaborative cloud environment for building and running Spark applications on PKS/Kubernetes
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Python in worker has different version 2.7 than that in driver 3.6 #26

Closed jaskiratr closed 5 years ago

jaskiratr commented 5 years ago

Hi, firstly thank you for such a clean k8s implementation for Jupyter + Pyspark.

I was able to set it up through helm chart.

helm install --name jupyter --namespace spark ./spark-on-k8s/charts/jupyter-with-spark/

When I run the Pi example in a notebook, it throws following exception in the console.

Exception: Python in worker has different version 2.7 than that in driver 3.6, PySpark cannot run with different minor versions.Please check environment variables PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.

Code:

from __future__ import print_function

import sys
from random import random
from operator import add
import os
from pyspark.sql import SparkSession

spark = SparkSession\
      .builder\
      .appName("PythonPi")\
      .config("spark.app.name", "spark-pi")\
      .config("spark.executor.instances", "2")\
      .getOrCreate()
partitions = 2
n = 100000 * partitions

def f(_):
    x = random() * 2 - 1
    y = random() * 2 - 1
    return 1 if x ** 2 + y ** 2 <= 1 else 0

count = spark.sparkContext.parallelize(range(1, n + 1), partitions).map(f).reduce(add)
print("Pi is roughly %f" % (4.0 * count / n))

Console Output

---------------------------------------------------------------------------
Py4JJavaError                             Traceback (most recent call last)
<ipython-input-4-0e5d9b80b3d7> in <module>()
      8     return 1 if x ** 2 + y ** 2 <= 1 else 0
      9 
---> 10 count = spark.sparkContext.parallelize(range(1, n + 1), partitions).map(f).reduce(add)
     11 print("Pi is roughly %f" % (4.0 * count / n))

/opt/spark/python/pyspark/rdd.py in reduce(self, f)
    834             yield reduce(f, iterator, initial)
    835 
--> 836         vals = self.mapPartitions(func).collect()
    837         if vals:
    838             return reduce(f, vals)

/opt/spark/python/pyspark/rdd.py in collect(self)
    808         """
    809         with SCCallSiteSync(self.context) as css:
--> 810             port = self.ctx._jvm.PythonRDD.collectAndServe(self._jrdd.rdd())
    811         return list(_load_from_socket(port, self._jrdd_deserializer))
    812 

/opt/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in __call__(self, *args)
   1131         answer = self.gateway_client.send_command(command)
   1132         return_value = get_return_value(
-> 1133             answer, self.gateway_client, self.target_id, self.name)
   1134 
   1135         for temp_arg in temp_args:

/opt/spark/python/pyspark/sql/utils.py in deco(*a, **kw)
     61     def deco(*a, **kw):
     62         try:
---> 63             return f(*a, **kw)
     64         except py4j.protocol.Py4JJavaError as e:
     65             s = e.java_exception.toString()

/opt/spark/python/lib/py4j-0.10.4-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    317                 raise Py4JJavaError(
    318                     "An error occurred while calling {0}{1}{2}.\n".
--> 319                     format(target_id, ".", name), value)
    320             else:
    321                 raise Py4JError(

Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 0.0 failed 4 times, most recent failure: Lost task 1.3 in stage 0.0 (TID 7, 10.1.2.172, executor 1): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
  File "/opt/spark/python/lib/pyspark.zip/pyspark/worker.py", line 123, in main
    ("%d.%d" % sys.version_info[:2], version))
Exception: Python in worker has different version 2.7 than that in driver 3.6, PySpark cannot run with different minor versions.Please check environment variables PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.

    at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
    at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
    at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
    at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
    at org.apache.spark.scheduler.Task.run(Task.scala:108)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:748)

Driver stacktrace:
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1499)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1487)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1486)
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1486)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
    at scala.Option.foreach(Option.scala:257)
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1714)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1669)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1658)
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:630)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2022)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2043)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2062)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:2087)
    at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:936)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
    at org.apache.spark.rdd.RDD.collect(RDD.scala:935)
    at org.apache.spark.api.python.PythonRDD$.collectAndServe(PythonRDD.scala:458)
    at org.apache.spark.api.python.PythonRDD.collectAndServe(PythonRDD.scala)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:280)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:214)
    at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.api.python.PythonException: Traceback (most recent call last):
  File "/opt/spark/python/lib/pyspark.zip/pyspark/worker.py", line 123, in main
    ("%d.%d" % sys.version_info[:2], version))
Exception: Python in worker has different version 2.7 than that in driver 3.6, PySpark cannot run with different minor versions.Please check environment variables PYSPARK_PYTHON and PYSPARK_DRIVER_PYTHON are correctly set.

    at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
    at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
    at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
    at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
    at org.apache.spark.scheduler.Task.run(Task.scala:108)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    ... 1 more

Jupyter Notebook

%%sh
python --version
which python
> Python 3.6.3
> /opt/conda/bin/python

I also tried setting os.env variable. 

os.environ['PYSPARK_PYTHON'] = 'python3'
os.environ['PYSPARK_DRIVER_PYTHON'] = 'python3'

Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID 6, 10.1.2.174, executor 1): java.io.IOException: Cannot run program "python3": error=2, No such file or directory

Is this something related to python version in docker images?

Thanks!

jaskiratr commented 5 years ago

Oops. I just had to run Python2 notebook instead of a Python3. Sorry about that.