Sanitise species names with partial matches of invalid terms correctly - Githubissues

TIBHannover / BacDiveR

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

https://TIBHannover.GitHub.io/BacDiveR/

MIT License

10 stars 12 forks source link

Sanitise species names with partial matches of invalid terms correctly #117

Open katrinleinweber opened 3 years ago

katrinleinweber commented 3 years ago

Fixes #116 quickly. Thanks for the hint, @gregpoore! Please try installing the package from this ref 116-repair-invalid-search-term.

Before merging, I should check, whether BacDive itself hiccups on the input example I'm sanitising here.

I have...

[x] ... run make check in the terminal and saw now errors.
[x] ... added/updated tests to https://github.com/TIBHannover/BacDiveR/tree/master/tests/testthat/ for new features or bug-fixes.
[ ] ... updated the changelog / NEWS.md in the Unreleased section, if my PR introduces user-facing changes.
[x] ... read (at least) the license and agreed that it will apply to my contribution as well.

If this is a release PR, additionally

[ ] Move Unreleased changes in NEWS.md to dedicated section
[ ] Copy those & the new version number to new GitHub release, together with the README.md's 1st paragraph
[ ] Increment the [SemVer.org] number in the DESCRIPTION file.