retrieve_data(searchTerm = "DSM 319"…) yields error

TIBHannover / BacDiveR

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

https://TIBHannover.GitHub.io/BacDiveR/

MIT License

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retrieve_data(searchTerm = "DSM 319"…) yields error #45

Closed katrinleinweber closed 6 years ago

katrinleinweber commented 6 years ago

x[[1]][1]$url : $ operator is invalid for atomic vectors probably from interaction of

https://github.com/tibhannover/BacDiveR/blob/development/R/retrieve_data.R#L75

with

https://github.com/tibhannover/BacDiveR/blob/development/R/retrieve_data.R#L97-L103

~~try removing Rcurl and hand URL over to fromJSON directly~~
~~pass loop flag into download to switch off gsub for single downloads~~

katrinleinweber commented 6 years ago

I meant #54 m-(