Generate BacDive upper ontology (BDO) v0.00 - concepts & properties, controlled vocabularies - Githubissues

TIBHannover / diaspora

Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information (BacDive & Semantics)

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Generate BacDive upper ontology (BDO) v0.00 - concepts & properties, controlled vocabularies #19

Closed javadch closed 1 year ago

javadch commented 1 year ago

javadch commented 1 year ago

List of potentially useful ontologies:

[ ] BioPortal (https://bioportal.bioontology.org/)
[ ] Obo foundry (http://www.obofoundry.org/)
[ ] OLS at EBI (https://www.ebi.ac.uk/ols/)
[ ] OMP Ontology (https://bioportal.bioontology.org/ontologies/OMP/?p=summary)
[ ] Micro Ontology (MicrO) http://www.obofoundry.org/ontology/micro.html
[ ] sequences, collections, time interval, ranges, controlled vocabulary(eg- list of colours, list of days, ) SKOS
[ ] cell ontology from OBO, http://www.obofoundry.org/ontology/cl.html
[ ] Taxonomy Rank https://lpsn.dsmz.de/
[ ] Unit of Measurement(uO) https://bioportal.bioontology.org/ontologies/UO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUO_0000005
[ ] Some are structure/Cultivation may need to go for some source of process
[ ] Location---Ontology for Occurrence modelling https://spec.edmcouncil.org/fibo/ontology/FND/DatesAndTimes/Occurrences/
[ ] Bibliography Ontology(https://bibliontology.com/)
[ ] Microbial Culture Collection Vocabulary https://bioportal.bioontology.org/ontologies/MCCV/

javadch commented 1 year ago

Use this as a template: https://github.com/stream-project/ontology/blob/master/MatVoc-Core.ttl

Define the main concepts and link them to known concepts via owl:equivalentClass or other OWL terms like subclass, ...

InquisitiveVi commented 1 year ago

List of new tables and their inter relationships