TIGRLab / air-tigrs

Orchestration tools for TIGRLab's data management infrastructure
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[ENH] Implement XNAT Extract DAG #11

Open jerdra opened 3 years ago

jerdra commented 3 years ago

This DAG would carry out pulling data from our central XNAT repository and pull data into the filesystem. It would run dm_xnat_extract.py with appropriate configuration being pulled from datman.config. In addition given that there are plans to implement a BIDS sub-command within the dm_xnat_extract.py script - the DAG should also read the config to determine whether to run XNAT extraction using dcm2bids or using the standard dcm2niix utility.