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TIO-IKIM / CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification
https://doi.org/10.1016/j.media.2024.103143
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Error reported in execution example #18

Closed cowrturn closed 1 year ago

cowrturn commented 1 year ago

Traceback (most recent call last): File "/media/baize/9_1_test/CellViT-main/./cell_segmentation/inference/cell_detection.py", line 1046, in wsi_file = WSI( File "", line 10, in init File "/media/baize/9_1_test/CellViT-main/datamodel/wsi_datamodel.py", line 60, in __post_init__ self._get_metadata() File "/media/baize/9_1_test/CellViT-main/datamodel/wsi_datamodel.py", line 70, in _get_metadata with open(self.metadata_path.resolve(), "r") as metadata_yaml: FileNotFoundError: [Errno 2] No such file or directory: '/media/baize/9_1_test/CellViT-main/example/output/preprocessing/TCGA-V5-A7RE-11A-01-TS1.57401526-EF9E-49AC-8FF6-B4F9652311CE/metadata.yaml' @FabianHoerst