cell_count.csv & types.csv

TIO-IKIM / CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

https://doi.org/10.1016/j.media.2024.103143

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cell_count.csv & types.csv #68

Open happywt opened 1 month ago

happywt commented 1 month ago

Hello, I want to use CellViT to train CoNSeP dataset. I have successfully converted 1000x1000 png image and.mat format annotation data from the original dataset into 256x256 png image and.nPY annotation data. But now I have a difficulty, I don't know how to get cell_count.csv information and types.csv information for each image. Can you tell me how to get the above two information? Your answer is very important to me, thank you!

FabianHoerst commented 2 weeks ago

Hello,

sorry for the late reply. Maybe it is the best to check out the files from the PanNuke dataset and create it on your own or write an own dataloader/trainer without the information needed.

Best, Fabian