Speeding up minor variants analysis

TORCH-Consortium / MAGMA

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

https://doi.org/10.1371/journal.pcbi.1011648

GNU General Public License v3.0

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Open vrennie opened 11 months ago

vrennie commented 11 months ago

@mdediegofuertes noticed a long run time related to this. Could be worth to use a threading tag to increase parallelisation

abhi18av commented 11 months ago

Expanding on the context here

Threading tag from tb-profiler
Also worth investigating whether the problem happens only with processes in structural variant analysis

abhi18av commented 1 month ago

I discussed this part with @jodyphelan as part of a general optimizations which could be made in `tb-profiler.