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TORCH-Consortium / MAGMA

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research
https://doi.org/10.1371/journal.pcbi.1011648
GNU General Public License v3.0
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Standardisation of MGIT-sputum-culture pairs #166

Open vrennie opened 11 months ago

vrennie commented 11 months ago

Would be interesting to have a standard conformation that aids comparison within the same sample if they have been sequenced at different stages

abhi18av commented 1 month ago

Hi @vrennie and @mdediegofuertes ,

Maybe, this could be expressed in a standardized coding of stages (3-month , 6-month etc)

Or simply we can accommodate the date of sequencing in the samplesheet as an optional field.