Changes for v1.1.1 - Githubissues

TORCH-Consortium / MAGMA

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

https://doi.org/10.1371/journal.pcbi.1011648

GNU General Public License v3.0

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Closed abhi18av closed 1 year ago

abhi18av commented 1 year ago

This PR adds support for

Structural variants analysis
Replaces the sed scripts with python for reproducibility when using pure Conda setup
Updated containers with dependencies
Updated TB-profiler database
The new GVCF reference

LennertVerboven commented 1 year ago

Looks good to me