TORCH-Consortium / MAGMA

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research
https://doi.org/10.1371/journal.pcbi.1011648
GNU General Public License v3.0
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Implement a test profile in the pipeline for new users #217

Closed abhi18av closed 2 weeks ago

abhi18av commented 1 month ago

Related #216

Often we are seeing that new users run across issues while using their own dataset, which in most cases requires a tweaking of the threshold parameters to allow the samples to pass through.

However, it is worth implementing a test profile in the pipeline so that we can do some sanity checks about the pipeline installation.