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This is the organization and research for the UF/IFAS Industrial Hemp Pilot Project
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Flowering data figure #42

Open wdlngtn opened 4 years ago

wdlngtn commented 4 years ago

@brymz

for the variety trial - could you order the varieties in columns according the their 'class' It would be nice to see a vertical column of all the early flowering, intermediate, cbd, and south Chinese. This would allow the reader to make and easy comparison between and within classes.

I would like the reader to see so identical the Canadian varieties were and importantly the difference between Puma-3 and Si-1.

This would also be a visual justification of the classes I assigned each group.

Do you think a red dot, or some signifier to point out where the 50% flowering time is?

image

wdlngtn commented 4 years ago

Also, is there any reason not to share this with Brian.Mengzi to keep them in the loop? @brymz

brymz commented 4 years ago

No reason not to share. I'll try to get to the figure revision by end of the day.

wdlngtn commented 4 years ago

Also, is there a new version of the table of estimated flowering time for each plot in the var trial and 8?

wdlngtn commented 4 years ago

Also, could the X axis be the same scale for each plot. It's hard to visually appreciate flowering time when the later, shorter experiments with fewer data points are more spreader out

brymz commented 4 years ago

order the varieties in columns according the their 'class' some signifier to point out where the 50% flowering time is

flower_variety_class

X axis be the same scale for each plot

flower_pilot

new version of the table of estimated flowering time for each plot in the var trial

Class,Variety,avg_induc_interval,induc_date,sd_induc_interval
Canadian,CFX-1,19,2019-06-10,0
Canadian,CFX-2,20,2019-06-11,2
Canadian,Joey,19.5,2019-06-11,1
Canadian,Canda,21,2019-06-12,2.309401076758503
Canadian,CRS-1,21,2019-06-12,2.309401076758503
NorthernChinese,HanFNQ,22.25,2019-06-13,2.9860788111948193
SouthernEuropean,Carmagnola,22.5,2019-06-13,1
Poland,Tygra,22.75,2019-06-14,2.8722813232690143
SouthernEuropean,CarmagnolaSelezionata,23.25,2019-06-14,2.0615528128088303
SouthernEuropean,Helena,23.25,2019-06-14,2.0615528128088303
NorthernChinese,HanFN-H,23.75,2019-06-15,1.5
SouthernEuropean,Fibranova,26.5,2019-06-17,1
SouthernEuropean,Eletta,28,2019-06-19,0
MiddleChinese,HanNE,32.6,2019-06-24,2.8809720581775866
MiddleChinese,HanNW,42,2019-07-03,10.44030650891055
Uncertain,CherryBlossomxTI,66,2019-07-27,8.445906306213285
Uncertain,BerryBlossom,69.5,2019-07-31,5.802298395176403
SouthChina,Puma-3,99.25,2019-08-29,5.251983752196243
SouthChina,Puma-4,100.75,2019-08-31,7.32006375199925
SouthChina,Bama,107.75,2019-09-07,1.5
SouthChina,Yuma,107.75,2019-09-07,1.5
SouthChina,Yuma-2,107.75,2019-09-07,1.5
SouthChina,Si-1,110,2019-09-09,0
wdlngtn commented 4 years ago

I REALLY like the vertical line for flowering time - it looks right for all of them. Could you make it red to be more conspicuous. @brymz

Also, can you stack the classes in vertical columns? This would make the vertical line indicating 50% flowering to be more comparable between varieties of the same class.

wdlngtn commented 4 years ago

Also, I notice an error on Han NW, I will pull the data and fix that now

wdlngtn commented 4 years ago

I fixed the issue. Data on Github is current

brymz commented 4 years ago

Could you make it red to be more conspicuous

Went with grey to be publication friendly.

stack the classes in vertical columns

Best I can do with unbalanced Class factor. What's up with Class == Poland?

flower_variety_class

Here's a look by Class. flower_class

wdlngtn commented 4 years ago

Hmm, Perhaps Class Poland and Canada should be combined. both are around latitude 50 and look the same.

Charts looks great!I like the gray.

On Tue, Mar 10, 2020 at 4:54 PM Zack Brym notifications@github.com wrote:

Could you make it red to be more conspicuous

Went with grey to be publication friendly.

stack the classes in vertical columns

Best I can do with unbalanced Class factor. What's up with Class == Poland ?

[image: flower_variety_class] https://user-images.githubusercontent.com/1743560/76358257-93869d00-62ef-11ea-91df-383f87c70665.png

Here's a look by Class. [image: flower_class] https://user-images.githubusercontent.com/1743560/76358336-b022d500-62ef-11ea-8ad4-d69f67f31931.png

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wdlngtn commented 4 years ago

could middle Chinese and the CBD be stacked? they are comparable

On Tue, Mar 10, 2020 at 4:57 PM Will Wadlington wdlngtn@gmail.com wrote:

Hmm, Perhaps Class Poland and Canada should be combined. both are around latitude 50 and look the same.

Charts looks great!I like the gray.

On Tue, Mar 10, 2020 at 4:54 PM Zack Brym notifications@github.com wrote:

Could you make it red to be more conspicuous

Went with grey to be publication friendly.

stack the classes in vertical columns

Best I can do with unbalanced Class factor. What's up with Class == Poland?

[image: flower_variety_class] https://user-images.githubusercontent.com/1743560/76358257-93869d00-62ef-11ea-91df-383f87c70665.png

Here's a look by Class. [image: flower_class] https://user-images.githubusercontent.com/1743560/76358336-b022d500-62ef-11ea-8ad4-d69f67f31931.png

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/TREC-Agroecology/hemp/issues/42?email_source=notifications&email_token=AET7WUB6SKRVOPPSLNYZBN3RG2SHNA5CNFSM4LFAX2O2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEONDPNA#issuecomment-597309364, or unsubscribe https://github.com/notifications/unsubscribe-auth/AET7WUC2TY6UNOLTO7EYER3RG2SHNANCNFSM4LFAX2OQ .

wdlngtn commented 4 years ago

can I have a list of each flowering time?

On Tue, Mar 10, 2020 at 4:58 PM Will Wadlington wdlngtn@gmail.com wrote:

could middle Chinese and the CBD be stacked? they are comparable

On Tue, Mar 10, 2020 at 4:57 PM Will Wadlington wdlngtn@gmail.com wrote:

Hmm, Perhaps Class Poland and Canada should be combined. both are around latitude 50 and look the same.

Charts looks great!I like the gray.

On Tue, Mar 10, 2020 at 4:54 PM Zack Brym notifications@github.com wrote:

Could you make it red to be more conspicuous

Went with grey to be publication friendly.

stack the classes in vertical columns

Best I can do with unbalanced Class factor. What's up with Class == Poland?

[image: flower_variety_class] https://user-images.githubusercontent.com/1743560/76358257-93869d00-62ef-11ea-91df-383f87c70665.png

Here's a look by Class. [image: flower_class] https://user-images.githubusercontent.com/1743560/76358336-b022d500-62ef-11ea-8ad4-d69f67f31931.png

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/TREC-Agroecology/hemp/issues/42?email_source=notifications&email_token=AET7WUB6SKRVOPPSLNYZBN3RG2SHNA5CNFSM4LFAX2O2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEONDPNA#issuecomment-597309364, or unsubscribe https://github.com/notifications/unsubscribe-auth/AET7WUC2TY6UNOLTO7EYER3RG2SHNANCNFSM4LFAX2OQ .

brymz commented 4 years ago

So perhaps, instead of Class, group by Latitude? Latitude needs to be better defined as a categorical variable or ranges for bins. Also, Class == Uncertain is listed as Latitude == . which needs to be revised in PlotVarietFile.csv.

brymz commented 4 years ago

can I have a list of each flowering time?

Be more specific. How is what you are asking for different from the table I pasted in an earlier comment?

wdlngtn commented 4 years ago

Latitude 50, 45, (40? fir CBD), 35, and 25 would work for the data and the writing.

On Tue, Mar 10, 2020 at 5:01 PM Will Wadlington wdlngtn@gmail.com wrote:

can I have a list of each flowering time?

On Tue, Mar 10, 2020 at 4:58 PM Will Wadlington wdlngtn@gmail.com wrote:

could middle Chinese and the CBD be stacked? they are comparable

On Tue, Mar 10, 2020 at 4:57 PM Will Wadlington wdlngtn@gmail.com wrote:

Hmm, Perhaps Class Poland and Canada should be combined. both are around latitude 50 and look the same.

Charts looks great!I like the gray.

On Tue, Mar 10, 2020 at 4:54 PM Zack Brym notifications@github.com wrote:

Could you make it red to be more conspicuous

Went with grey to be publication friendly.

stack the classes in vertical columns

Best I can do with unbalanced Class factor. What's up with Class == Poland?

[image: flower_variety_class] https://user-images.githubusercontent.com/1743560/76358257-93869d00-62ef-11ea-91df-383f87c70665.png

Here's a look by Class. [image: flower_class] https://user-images.githubusercontent.com/1743560/76358336-b022d500-62ef-11ea-8ad4-d69f67f31931.png

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/TREC-Agroecology/hemp/issues/42?email_source=notifications&email_token=AET7WUB6SKRVOPPSLNYZBN3RG2SHNA5CNFSM4LFAX2O2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEONDPNA#issuecomment-597309364, or unsubscribe https://github.com/notifications/unsubscribe-auth/AET7WUC2TY6UNOLTO7EYER3RG2SHNANCNFSM4LFAX2OQ .

wdlngtn commented 4 years ago

I'd like the date/days after planting that each variety flowers. This will be in the text of the results and I think on the table of final heights.

On Tue, Mar 10, 2020 at 5:05 PM Zack Brym notifications@github.com wrote:

can I have a list of each flowering time?

Be more specific. How is what you are asking for different from the table I pasted in an earlier comment?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/TREC-Agroecology/hemp/issues/42?email_source=notifications&email_token=AET7WUG2TMCEN5Z3B6TYTJ3RG2TQVA5CNFSM4LFAX2O2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEONFGVA#issuecomment-597316436, or unsubscribe https://github.com/notifications/unsubscribe-auth/AET7WUDHRXR5OP33FT7H2NDRG2TQVANCNFSM4LFAX2OQ .

brymz commented 4 years ago

From the table above...

avg_induc_interval = average days after planting for each variety induc_date = average days after planting expressed as date sd_induc_interval = standard deviation for days after planting

wdlngtn commented 4 years ago

I see the above table now, thank you. Could you also at 10% flowering?

wdlngtn commented 4 years ago

Can you make a table of flowering data for the planting date trial?

brymz commented 4 years ago

Add 10% flowering to variety trial:

Latitude,Variety,avg_induc_interval_10,induc_date_10,sd_induc_interval_10,avg_induc_interval_50,induc_date_50,sd_induc_interval_50
45,Helena,19,2019-06-10,NA,21,2019-06-12,NA
50,CFX-1,19,2019-06-10,0,19,2019-06-10,0
50,CRS-1,19,2019-06-10,0,21,2019-06-12,2.309401076758503
45,HanFNQ,19.5,2019-06-11,1,22.25,2019-06-13,2.9860788111948193
50,Canda,20,2019-06-11,2,21,2019-06-12,2.309401076758503
50,CFX-2,19.5,2019-06-11,1,20,2019-06-11,2
50,Joey,19.5,2019-06-11,1,19.5,2019-06-11,1
50,Tygra,20.5,2019-06-11,1.9148542155126762,22.75,2019-06-14,2.8722813232690143
45,HanFN-H,21.25,2019-06-12,3.304037933599835,23.75,2019-06-15,1.5
40,Carmagnola,22,2019-06-13,1.1547005383792515,22.5,2019-06-13,1
40,CarmagnolaSelezionata,21.5,2019-06-13,1.9148542155126762,23.25,2019-06-14,2.0615528128088303
40,Fibranova,22.5,2019-06-13,1,26.5,2019-06-17,1
40,Helena,21.6666666666667,2019-06-13,1.1547005383792515,24,2019-06-15,1.7320508075688772
40,Eletta,26,2019-06-17,0,28,2019-06-19,0
35,HanNE,27,2019-06-18,5.612486080160912,32.6,2019-06-24,2.8809720581775866
35,HanNW,29.6666666666667,2019-06-21,6.3508529610858835,42,2019-07-03,10.44030650891055
NA,CherryBlossomxTI,55.75,2019-07-17,4.7871355387816905,66,2019-07-27,8.445906306213285
NA,BerryBlossom,61.75,2019-07-23,4.7871355387816905,69.5,2019-07-31,5.802298395176403
25,Puma-4,84.5,2019-08-14,4.123105625617661,100.75,2019-08-31,7.32006375199925
25,Puma-3,87,2019-08-17,2.309401076758503,99.25,2019-08-29,5.251983752196243
25,Yuma,93,2019-08-23,0,107.75,2019-09-07,1.5
25,Bama,93.75,2019-08-24,1.5,107.75,2019-09-07,1.5
25,Yuma-2,96.5,2019-08-26,7,107.75,2019-09-07,1.5
25,Si-1,103.5,2019-09-03,7,110,2019-09-09,0
brymz commented 4 years ago

For the planting date trial:

PlantingDate,Variety,avg_induc_interval_10,induc_date_10,sd_induc_interval_10,avg_induc_interval_50,induc_date_50,sd_induc_interval_50
May-01-2019,Tygra,19,2019-05-20,0,19,2019-05-20,0
May-01-2019,Carmag. Sel.,19,2019-05-20,0,21,2019-05-22,2.309401076758503
May-01-2019,Eletta,21,2019-05-22,2.309401076758503,28,2019-05-29,0
May-22-2019,Tygra,20.5,2019-06-11,1.9148542155126762,22.75,2019-06-14,2.8722813232690143
May-22-2019,Carmag. Sel.,21.5,2019-06-13,1.9148542155126762,23.25,2019-06-14,2.0615528128088303
May-22-2019,Eletta,26,2019-06-17,NA,28,2019-06-19,NA
May-01-2019,BerryBlossom,56.6666666666667,2019-06-27,1.1547005383792515,74.3333333333333,2019-07-14,8.504900548115382
May-01-2019,CherryBlos. xTI,63,2019-07-03,6.244997998398398,79.6666666666667,2019-07-20,4.041451884327381
June-21-2019,Eletta,24.5,2019-07-15,1,28,2019-07-19,0
June-21-2019,Tygra,24,2019-07-15,0,24,2019-07-15,0
June-21-2019,Carmag. Sel.,24,2019-07-15,0,28,2019-07-19,0
May-22-2019,CherryBlos. xTI,55.75,2019-07-17,4.7871355387816905,66,2019-07-27,8.445906306213285
May-22-2019,BerryBlossom,61.75,2019-07-23,4.7871355387816905,69.5,2019-07-31,5.802298395176403
July-18-2019,Tygra,20.5,2019-08-07,1,22,2019-08-09,0
July-18-2019,Eletta,21.5,2019-08-09,1,27.25,2019-08-14,1.5
July-18-2019,Carmag. Sel.,22,2019-08-09,0,27,2019-08-14,1.7320508075688772
June-21-2019,CherryBlos. xTI,51.3333333333333,2019-08-11,4.041451884327381,51.3333333333333,2019-08-11,4.041451884327381
May-01-2019,Yuma-2,106,2019-08-15,0,129.5,2019-09-08,4.041451884327381
May-01-2019,Puma-3,105.5,2019-08-15,3.3166247903554,126,2019-09-04,0
May-22-2019,Puma-3,85,2019-08-15,NA,96,2019-08-26,NA
June-21-2019,BerryBlossom,56.3333333333333,2019-08-16,6.429100507328637,56.3333333333333,2019-08-16,6.429100507328637
June-21-2019,Puma-3,58,2019-08-18,3.8297084310253524,NA,NA,NA
May-01-2019,Bama,110.5,2019-08-19,5.802298395176403,129.5,2019-09-08,4.041451884327381
May-22-2019,Bama,93.75,2019-08-24,1.5,107.75,2019-09-07,1.5
May-22-2019,Yuma-2,96.5,2019-08-26,7,107.75,2019-09-07,1.5
July-18-2019,BerryBlossom,39,2019-08-26,0,46.3333333333333,2019-09-02,4.725815626252608
July-18-2019,CherryBlos. xTI,43.25,2019-08-30,5.852349955359813,48,2019-09-04,0
June-21-2019,Bama,70.75,2019-08-31,7.32006375199925,NA,NA,NA
July-18-2019,Puma-3,50.5,2019-09-06,2.886751345948129,NA,NA,NA
June-21-2019,Yuma-2,77.75,2019-09-07,2.9860788111948193,NA,NA,NA
July-18-2019,Yuma-2,54.5,2019-09-10,1,NA,NA,NA
July-18-2019,Bama,54,2019-09-10,1.4142135623730951,NA,NA,NA
brymz commented 4 years ago

figs with latitude

flower_variety_class

flower_class

wdlngtn commented 4 years ago

Add 10% flowering to variety trial:

Latitude,Variety,avg_induc_interval_10,induc_date_10,sd_induc_interval_10,avg_induc_interval_50,induc_date_50,sd_induc_interval_50
45,Helena,19,2019-06-10,NA,21,2019-06-12,NA
50,CFX-1,19,2019-06-10,0,19,2019-06-10,0
50,CRS-1,19,2019-06-10,0,21,2019-06-12,2.309401076758503
45,HanFNQ,19.5,2019-06-11,1,22.25,2019-06-13,2.9860788111948193
50,Canda,20,2019-06-11,2,21,2019-06-12,2.309401076758503
50,CFX-2,19.5,2019-06-11,1,20,2019-06-11,2
50,Joey,19.5,2019-06-11,1,19.5,2019-06-11,1
50,Tygra,20.5,2019-06-11,1.9148542155126762,22.75,2019-06-14,2.8722813232690143
45,HanFN-H,21.25,2019-06-12,3.304037933599835,23.75,2019-06-15,1.5
40,Carmagnola,22,2019-06-13,1.1547005383792515,22.5,2019-06-13,1
40,CarmagnolaSelezionata,21.5,2019-06-13,1.9148542155126762,23.25,2019-06-14,2.0615528128088303
40,Fibranova,22.5,2019-06-13,1,26.5,2019-06-17,1
40,Helena,21.6666666666667,2019-06-13,1.1547005383792515,24,2019-06-15,1.7320508075688772
40,Eletta,26,2019-06-17,0,28,2019-06-19,0
35,HanNE,27,2019-06-18,5.612486080160912,32.6,2019-06-24,2.8809720581775866
35,HanNW,29.6666666666667,2019-06-21,6.3508529610858835,42,2019-07-03,10.44030650891055
NA,CherryBlossomxTI,55.75,2019-07-17,4.7871355387816905,66,2019-07-27,8.445906306213285
NA,BerryBlossom,61.75,2019-07-23,4.7871355387816905,69.5,2019-07-31,5.802298395176403
25,Puma-4,84.5,2019-08-14,4.123105625617661,100.75,2019-08-31,7.32006375199925
25,Puma-3,87,2019-08-17,2.309401076758503,99.25,2019-08-29,5.251983752196243
25,Yuma,93,2019-08-23,0,107.75,2019-09-07,1.5
25,Bama,93.75,2019-08-24,1.5,107.75,2019-09-07,1.5
25,Yuma-2,96.5,2019-08-26,7,107.75,2019-09-07,1.5
25,Si-1,103.5,2019-09-03,7,110,2019-09-09,0

There are two 'Helena' here. I think the one on the first line is erroneous because 'Helena' belongs to latitude 40 category.