Use the reference in mpileup to reduce FPs

TRON-Bioinformatics / covigator-ngs-pipeline

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

MIT License

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Use the reference in mpileup to reduce FPs #29

Closed priesgo closed 2 years ago

priesgo commented 2 years ago

This is spinned off #28