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TRON-Bioinformatics / covigator-ngs-pipeline

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
MIT License
18 stars 7 forks source link

add option to run pipeline on input VCF #38

Closed priesgo closed 1 year ago