TRON-Bioinformatics / covigator

CoVigator - Monitoring SARS-CoV-2 mutations
MIT License
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102 lineage metadata in dashboard #103

Closed johausmann closed 1 year ago

johausmann commented 1 year ago

Use lineage metadata from #61 to enrich the dashboard. Update the combo boxes in the lineages and samples tab to show a combination of pangolin id and WHO label.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.28 :tada:

Comparison is base (c183bb6) 83.63% compared to head (847c658) 83.91%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #103 +/- ## =========================================== + Coverage 83.63% 83.91% +0.28% =========================================== Files 47 47 Lines 4357 4421 +64 =========================================== + Hits 3644 3710 +66 + Misses 713 711 -2 ``` | [Impacted Files](https://app.codecov.io/gh/TRON-Bioinformatics/covigator/pull/103?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=TRON-Bioinformatics) | Coverage Δ | | |---|---|---| | [covigator/database/queries.py](https://app.codecov.io/gh/TRON-Bioinformatics/covigator/pull/103?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=TRON-Bioinformatics#diff-Y292aWdhdG9yL2RhdGFiYXNlL3F1ZXJpZXMucHk=) | `72.04% <100.00%> (+1.92%)` | :arrow_up: | | [covigator/references/lineage\_annotation.py](https://app.codecov.io/gh/TRON-Bioinformatics/covigator/pull/103?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=TRON-Bioinformatics#diff-Y292aWdhdG9yL3JlZmVyZW5jZXMvbGluZWFnZV9hbm5vdGF0aW9uLnB5) | `100.00% <100.00%> (ø)` | | | [...r/tests/unit\_tests/test\_database\_initialisation.py](https://app.codecov.io/gh/TRON-Bioinformatics/covigator/pull/103?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=TRON-Bioinformatics#diff-Y292aWdhdG9yL3Rlc3RzL3VuaXRfdGVzdHMvdGVzdF9kYXRhYmFzZV9pbml0aWFsaXNhdGlvbi5weQ==) | `100.00% <100.00%> (ø)` | | | [covigator/tests/unit\_tests/test\_queries.py](https://app.codecov.io/gh/TRON-Bioinformatics/covigator/pull/103?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=TRON-Bioinformatics#diff-Y292aWdhdG9yL3Rlc3RzL3VuaXRfdGVzdHMvdGVzdF9xdWVyaWVzLnB5) | `88.88% <100.00%> (+1.59%)` | :arrow_up: |

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