Closed priesgo closed 7 months ago
Results from discussion on 10.01.2023
Two alternatives:
We need the annotations with readable lineage names
Show pie plots over countries in a similar way to NextStrain. Size of circle is the prevalence of the lineage in a country When more lineages are selected the circle becomes a pie with different colors
Height will be the frequency X-axis genomic coordinates, full genome view Two colors for consensus and non-consensus mutations Threshold of frequency
Mirror option for second lineage
Threshold with minimum consensus in each lineage percentage)
We don't all genomic positions, but rather mutated positions Each row one lineage (>2) Color represents frequency or alternatively just a binary value yes/no (easier to interpret)
This is only useful for smaller regions (ie: domains or maybe genes) The size of each letter is the frequency
Some ideas from our team meeting: