Suggested Fixes - Githubissues

TS404 / AlignStat

A tool for the statistical comparison of alternative multiple sequence alignments

http://AlignStat.science.latrobe.edu.au

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Suggested Fixes #40

Closed iracooke closed 8 years ago

iracooke commented 8 years ago

[x] Emit sensible error if alignments are of different lengths
[x] Consider adding functionality estimate sum-of-pairs true positive (SPFP) and sum-of-pairs false negative (SPFN) scores of the estimated alignment on a per column basis
[x] Consider ordering based on common names between MSAs rather than requiring MSAs to be in a fixed order

TS404 commented 8 years ago

The alignment lengths isn't really a problem. There was evidently some copy/paste error on the short alignment test.

TS404 commented 8 years ago

comparison alignment sequences now ordered relative to reference alignment sequences. Names do not have to be identical. Just sequences.

iracooke commented 8 years ago

Beautiful! Of course .. that’s the right way to do it

On 28 Apr 2016, at 11:34 AM, Thomas Shafee notifications@github.com wrote:

comparison alignment sequences now ordered relative to reference alignment sequences. Names do not have to be identical. Just sequences.

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