TXiang-lab / blupADC

blupADC:An useful tool for animal and plant breeding
GNU General Public License v3.0
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Random Regression G matrix #7

Closed statslover123 closed 6 months ago

statslover123 commented 1 year ago

Is G Matrix format for random regression analysis just inverse?

qsmei commented 1 year ago

Yes, it is. User has to provide the inverse of the G matrix for conducting GBLUP analysis with DMU.

statslover123 commented 1 year ago

Thank you, is there a way to calculate reliability/h2 per time point?

qsmei commented 1 year ago

You're welcome. If I remember correctly, the genetic variance of each time point could be calculated as φGφ', where φ is the matrix of Legendre polynomials elements, and G is the genetic variacne-covaraince matrix. Maybe you can check the related article about random regerssion models.

statslover123 commented 1 year ago

If I use the blupf90 backend, instead of DMU, the relationship matrix format is different? along with calculation of genetic variance given file output? Which article are you referring to , it might have had the link deleted

qsmei commented 1 year ago

You can take a look at the ref: "Invited review: Advances and applications of random regression models: From quantitative genetics to genomics". Currently, blupADC didn't support random regression analysis with blupf90.

statslover123 commented 1 year ago

Thank you for the literature

https://qsmei.netlify.app/post/feature-8-run_blupf90/blupf90/#single-trait----pedigree-blup-model-with-random-regression-effect

In this link there is example of random regression with blupf90 am I mistaken? I will study the DMU option instead

qsmei commented 1 year ago

Sorry for the confusion, I made a mistake. I was thought I didn't write the random regression function for blupf90.

statslover123 commented 1 year ago

Thank you again