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TYMichaelsen / covid19

Bioinformatic pipelines used to assemble SARS-CoV-2 genomes from DK
GNU General Public License v3.0
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Creating cingularity sif file for pentaho fails #15

Closed tomersagi closed 4 years ago

tomersagi commented 4 years ago

Thanks, but the build fails for some reason which I can't figure out. Any ideas? It managed to install all I asked it and fails on the creation itself:

[ot48zk@cs.aau.dk@a1024-gc1-e-03:/srv/rbd/covid19/git/covid19/bi_system] [base] master(+5/-4)+* ± singularity build --fakeroot pentaho.sif pentaho.def ... INFO: Adding labels INFO: Adding environment to container INFO: Adding runscript INFO: Creating SIF file... FATAL: While performing build: while creating SIF: while creating container: container file creation failed: open /srv/rbd/covid19/git/covid19/bi_system/pentaho.sif: permission denied

@KasperSkytte @biocyberman ideas?

tomersagi commented 4 years ago

Will create on a different machine and copy it