Metadata contains supicous pregnancy data

TYMichaelsen / covid19

Bioinformatic pipelines used to assemble SARS-CoV-2 genomes from DK

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Metadata contains supicous pregnancy data #22

Closed tomersagi closed 4 years ago

tomersagi commented 4 years ago

There are 102 cases of a person having Sex='M' and Pregnancy=1. Seems unreasonable. @TYMichaelsen maybe you can help track this down?

tomersagi commented 4 years ago

e.g.: SSI SSI-808, Pregnancy 1, Sex M, ReportAge 56, ReportAgeGrp 50-59

tomersagi commented 4 years ago

There are 102 such rows in the dataset 62 of them are not of child-bearing years

TYMichaelsen commented 4 years ago

That is wierd - in the complete linelist of metadata this is not an issue, only in the set we have recieved from SSI through Morten. I will ask Morten about it, also who you should contact in the future for metadata-related issues.