TYMichaelsen / mmtravis

Tools for (meta)transcriptome visualization
https://TYMichaelsen.github.io/mmtravis/
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installation of package mmtravis_1.1.1.tar.gz had non-zero exit status #1

Open Holly202109 opened 3 years ago

Holly202109 commented 3 years ago

Hi, Thomas, I am trying to install mmtravis. However, I repeatedly met this problem, as follows. Would you please take a look and give me some suggestions on how to solve this problem? Thank you.

remotes::install_github("TYMichaelsen/mmtravis") Downloading GitHub repo TYMichaelsen/mmtravis@HEAD Bioconductor version 3.12 (BiocManager 1.30.12), ?BiocManager::install for help Running R CMD build...

  • checking for file 'C:\Users\hlpwe\AppData\Local\Temp\RtmpK4u3Gx\remotes86c11b75ce0\TYMichaelsen-mmtravis-0bb0cb6/DESCRIPTION' ... OK
  • preparing 'mmtravis':
  • checking DESCRIPTION meta-information ... OK
  • checking for LF line-endings in source and make files and shell scripts
  • checking for empty or unneeded directories
  • building 'mmtravis_1.1.1.tar.gz'
  • installing source package 'mmtravis' ... using staged installation R ** data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'propr' Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Stop execute. ERROR: lazy loading failed for package 'mmtravis'
  • removing 'C:/R2021/R-4.0.5/library/mmtravis' installation of package ��C:/Users/hlpwe/AppData/Local/Temp/RtmpK4u3Gx/file86c3c6d6aa7/mmtravis_1.1.1.tar.gz�� had non-zero exit status
Jimaz commented 2 years ago

Hi, @Holly202109. I suppose it's too late for this but I faced the same problem. If you look carefully to the error, you miss propr package, so you have to install it:

install.packages("propr")

I also have other dependencies missing so I had to install them prior to install mmtravis. Hope this helps.

Cheers,

Jaime