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Taiji-pipeline / Taiji-view

BSD 3-Clause "New" or "Revised" License
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Error while installing Taiji-view #1

Open ravipatel4 opened 5 years ago

ravipatel4 commented 5 years ago

Hello, I am unable to install Taiji-view successfully. The installation breaks with the following error message printed last:

-- While building package inline-r-0.10.1 using: /home/awg58_0001/rkp55/.stack/setup-exe-cache/x86_64-linux/Cabal-simple_mPHDZzAJ_2.4.0.1_ghc-8.6.4 --builddir=.stack-work/dist/x86_64-linux/Cabal-2.4.0.1 configure --user --package-db=clear --package-db=global --package-db=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/pkgdb --libdir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/lib --bindir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/bin --datadir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/share --libexecdir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/libexec --sysconfdir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/etc --docdir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/doc/inline-r-0.10.1 --htmldir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/doc/inline-r-0.10.1 --haddockdir=/home/awg58_0001/rkp55/.stack/snapshots/x86_64-linux/e57540e1187d868758ccc87a32009ec8f925f2e0eba1064d0c0c2ebabaff89e4/8.6.4/doc/inline-r-0.10.1 --dependency=aeson=aeson-1.4.2.0-26VhTyUqTiuCsFRHRyqlEk --dependency=base=base-4.12.0.0 --dependency=bytestring=bytestring-0.10.8.2 --dependency=containers=containers-0.6.0.1 --dependency=data-default-class=data-default-class-0.1.2.0-FeIQ5tLoVZBHMSgrT9zptQ --dependency=deepseq=deepseq-1.4.4.0 --dependency=exceptions=exceptions-0.10.0-Fk1gadAOfJNLLwbSwI7o3A --dependency=inline-c=inline-c-0.7.0.1-LGFC5g7BVnoLJVeY1PWzkD --dependency=mtl=mtl-2.2.2 --dependency=pretty=pretty-1.1.3.6 --dependency=primitive=primitive-0.6.4.0-ILgywxtLpvnAOlEISPpP5b --dependency=process=process-1.6.5.0 --dependency=reflection=reflection-2.1.4-D3IaixAKGmk6dzEKDGsgtn --dependency=setenv=setenv-0.1.1.3-HP1VaXwIiC57fC12rF12pz --dependency=singletons=singletons-2.5.1-LGoXloZECiQLpeChAPJN9H --dependency=template-haskell=template-haskell-2.14.0.0 --dependency=text=text-1.2.3.1 --dependency=th-lift=th-lift-0.7.11-hZJVZ2zmXw59mRAYP9RXW --dependency=th-orphans=th-orphans-0.13.6-3tDttCPFTDPA4bRLIx24sy --dependency=transformers=transformers-0.5.6.2 --dependency=unix=unix-2.7.2.2 --dependency=vector=vector-0.12.0.2-JMWQggIZox12SqdnR4PU2C --exact-configuration --ghc-option=-fhide-source-paths Process exited with code: ExitFailure 1

When I tried to run the specified command in the above message to obtain more informative error messages, I get following errors raised due to missing dependencies.

Configuring Taiji-view-0.1.0... Cabal-simple_mPHDZzAJ_2.4.0.1_ghc-8.6.4: Encountered missing dependencies: SVGFonts -any, Taiji-types -any, bioinformatics-toolkit >=0.6.0, bytestring-lexing -any, case-insensitive -any, cereal -any, clustering -any, colour -any, diagrams-cairo -any, diagrams-core -any, diagrams-lib -any, double-conversion -any, haskell-igraph >=0.7.0, inline-r -any, matrices -any, optparse-applicative -any, palette -any, shelly -any, statistics >=0.14.0, unordered-containers -any

Can you please help me with installing Taiji-view?

Thanks.

kaizhang commented 5 years ago

The visualization component will be integrated into the main program in the next release. Please wait 1~2 weeks.

ravipatel4 commented 5 years ago

Thanks @kaizhang. Eagerly looking forward to the newer version.