I tried to integrate RNA-seq and ChIP-seq(H3K27ac) data using Taiji. However, it keeps showing errors on HiC and SCATAC-seq reads input. Could you please help me to fix this problem? I also attached two input files I prepared for testing.
######################################
(base) -bash-4.2$ /home/bz10/lib/taiji/taiji run --config config.yml
[INFO][01-18 09:46] HiC_Read_Input(5cd2..): Running ...
[ERROR][01-18 09:46] HiC_Read_Input(5cd2..) Failed: Multiple IDs exist for: ["Control_1","SCZ_untreated_1"]
CallStack (from HasCallStack):
error, called at src/Bio/Data/Experiment/Parser.hs:96:5 in bio-experiments-0.3.0-HHcsqTMnfoxB5ie2fQ77OZ:Bio.Data.Experiment.Parser
CallStack (from HasCallStack):
error, called at src/Control/Workflow/Interpreter/Exec.hs:146:37 in SciFlow-0.8.0-IRKsT2ba9M716PeGlwt2FT:Control.Workflow.Interpreter.Exec
[INFO][01-18 09:46] SCATAC_Read_Input(fa14..): Running ...
[ERROR][01-18 09:46] SCATAC_Read_Input(fa14..) Failed: Multiple IDs exist for: ["Control_1","SCZ_untreated_1"]
CallStack (from HasCallStack):
error, called at src/Bio/Data/Experiment/Parser.hs:96:5 in bio-experiments-0.3.0-HHcsqTMnfoxB5ie2fQ77OZ:Bio.Data.Experiment.Parser
CallStack (from HasCallStack):
error, called at src/Control/Workflow/Interpreter/Exec.hs:146:37 in SciFlow-0.8.0-IRKsT2ba9M716PeGlwt2FT:Control.Workflow.Interpreter.Exec
[ERROR][01-18 09:46] Program exits with errors
######################################
Hi Kai,
I tried to integrate RNA-seq and ChIP-seq(H3K27ac) data using Taiji. However, it keeps showing errors on HiC and SCATAC-seq reads input. Could you please help me to fix this problem? I also attached two input files I prepared for testing.
###################################### (base) -bash-4.2$ /home/bz10/lib/taiji/taiji run --config config.yml [INFO][01-18 09:46] HiC_Read_Input(5cd2..): Running ... [ERROR][01-18 09:46] HiC_Read_Input(5cd2..) Failed: Multiple IDs exist for: ["Control_1","SCZ_untreated_1"] CallStack (from HasCallStack): error, called at src/Bio/Data/Experiment/Parser.hs:96:5 in bio-experiments-0.3.0-HHcsqTMnfoxB5ie2fQ77OZ:Bio.Data.Experiment.Parser CallStack (from HasCallStack): error, called at src/Control/Workflow/Interpreter/Exec.hs:146:37 in SciFlow-0.8.0-IRKsT2ba9M716PeGlwt2FT:Control.Workflow.Interpreter.Exec [INFO][01-18 09:46] SCATAC_Read_Input(fa14..): Running ... [ERROR][01-18 09:46] SCATAC_Read_Input(fa14..) Failed: Multiple IDs exist for: ["Control_1","SCZ_untreated_1"] CallStack (from HasCallStack): error, called at src/Bio/Data/Experiment/Parser.hs:96:5 in bio-experiments-0.3.0-HHcsqTMnfoxB5ie2fQ77OZ:Bio.Data.Experiment.Parser CallStack (from HasCallStack): error, called at src/Control/Workflow/Interpreter/Exec.hs:146:37 in SciFlow-0.8.0-IRKsT2ba9M716PeGlwt2FT:Control.Workflow.Interpreter.Exec [ERROR][01-18 09:46] Program exits with errors ######################################
Thanks, Bohan