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Taiji-pipeline / Taiji

All-in-one analysis pipeline
https://taiji-pipeline.github.io/
BSD 3-Clause "New" or "Revised" License
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How the multiple PWM of a TF affect pagerank score #27

Open swparkbi opened 2 years ago

swparkbi commented 2 years ago

Hi Kai,

First of all, thank you so much to provide this program continuously. It is a great opportunity to utilize Taiji to find novel TF candidates for my work.

During I ran Taiji, I found a single TF has multiple PWM in the meme file from the cisBP database. I just wonder whether the number of PWM per TF can affect Pagerank score.

Thanks a lot!

kaizhang commented 2 years ago

When there are multiple PWMs, the one that has the best matching score will be used.

swparkbi commented 2 years ago

How can I find which PWM is best matched?