31mATAC_Get_TFBS(83dd..) Failed: src/Bio/Data/Bed/Types.hs:(213,9)-(221,34): Non-exhaustive patterns in function go

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All-in-one analysis pipeline

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31mATAC_Get_TFBS(83dd..) Failed: src/Bio/Data/Bed/Types.hs:(213,9)-(221,34): Non-exhaustive patterns in function go #37

Open AlisaOmel opened 1 year ago

AlisaOmel commented 1 year ago

Hello,

I am using my own .bed file with NarrowPeaks and would like to use Taiji to get the TF ranking. The pipeline runs and I get the TFBS files in the output folder, but it fails when it reaches the ATAC_GET_TFBS with the following error:

Screenshot 2023-03-06 at 11 50 48 AM

I tried adding a tmp_dir flag in the config file, but that folder is empty. What could be causing this error? Thanks!

prabal97 commented 1 year ago

Hi I have the same issue!!

kaizhang commented 1 year ago

Judging from the log, it seems that Taiji doesn't find your narrow peaks.

AlisaOmel commented 1 year ago

This issue was solved. I was using a .bed and narrowPeaks file of merged replicates instead of separate replicates. When I separated the replicates into different files, it ran and recognized them.