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Taiji-pipeline / Taiji

All-in-one analysis pipeline
https://taiji-pipeline.github.io/
BSD 3-Clause "New" or "Revised" License
34 stars 9 forks source link

Taiji source code installation fails #45

Open gabrielascui opened 8 months ago

gabrielascui commented 8 months ago

Hi,

I'm trying to install Taiji from the source code in our CentOS server using stack and I'm getting requested to give my github credentials during the installation: 

[gascui@login02 Taiji-1.3.0]$ stack setup
Cloning c970d24adcb3a4a141f7ee205ba2af60f7c65717 from https://github.com/Taiji-pipeline/Taiji-utils.git
Cloning 251337aea1e9449c161b634fdb316f47f2f766f2 from https://github.com/Taiji-pipeline/bio-pipelines.git
Cloning 48ff0a243df42796000b8caaf61f2907b92c7d95 from https://github.com/Taiji-pipeline/bio-experiments.git
Cloning 7f34241225f9033a96050bde6ba958b8519041af from https://github.com/Taiji-pipeline/Taiji-RNA-seq.git
Cloning 9fc7181d071866279fbed19ffc5768d77ab5e66a from https://github.com/Taiji-pipeline/Taiji-ATAC-seq.git
Cloning f513e533dc23953fa65076bf2debc8c68c9f6d79 from https://github.com/Taiji-pipeline/Taiji-scRNA-seq.git
Cloning 9e14e4ffb40b7834f10c0bb2cceaefca5ea6310f from https://github.com/Taiji-pipeline/Taiji-scATAC-seq.git
Cloning a2ef0b3c162028ba1bd89c7f151b3e703f4cde8d from https://github.com/Taiji-pipeline/Taiji-fusion.git
Cloning c116cfa29e33d3142a6cb502f1dc4c02066d0aa9 from https://github.com/kaizhang/HsHTSLib.git
Cloning d64dd55579c8db9625028065b4cb3314e8f0c4a9 from https://github.com/kaizhang/ChromVAR.git
Cloning aed69651b2da5ca4c9076c8c4d981b876932e5b8 from https://github.com/kaizhang/matrix-sized.git
Cloning d790e030e6e08b04dc0971221b6054d6700d82e7 from https://github.com/kaizhang/haskell-igraph.git
Cloning 89b8d1cdf4fa7b075794c37c070cab8ac27acfaf from https://github.com/kaizhang/bioinformatics-toolkit.git
Cloning e143f6bce9d7f1e13b0d12f11763f6f24d2da4df from https://github.com/Taiji-pipeline/distributed-process.git
Username for 'https://github.com': gabrielascui
Password for 'https://gabrielascui@github.com':
Received ExitFailure 128 when running
Raw command: /usr/bin/git clone https://github.com/Taiji-pipeline/distributed-process.git /mnt/hpcscratch/nodescratch/login02/with-repo507628/cloned
Standard error:

Cloning into '/mnt/hpcscratch/nodescratch/login02/with-repo507628/cloned'...
remote: Support for password authentication was removed on August 13, 2021.
remote: Please see https://docs.github.com/en/get-started/getting-started-with-git/about-remote-repositories#cloning-with-https-urls for information on currently recommended modes of authentication.
fatal: Authentication failed for 'https://github.com/Taiji-pipeline/distributed-process.git/'

Pre-compiled versions are not working for me as one of the ncurse libraries is outdated:

[gascui@login02 local]$ ./taiji-CentOS-x86_64
./taiji-CentOS-x86_64: error while loading shared libraries: libtinfo.so.5: cannot open shared object file: No such file or directory

Please advise.

Thank you !

Xnisongurumayum commented 4 months ago

Hi Gabriel, Have you been able to find a way to fix this ? I am encountering the same error!

Thanks you