Closed dchiu911 closed 4 years ago
pipeline/1-unsupervised/2-map_genes.R
hgnc/HGNC-Affymetrix-NanoString-OTTA_Map.csv
pipeline/3-post_processing/4-validate_array.R
nstring/nanostring_classifier_data_batch1_20170217_updated.csv
nstring/nanostring_classifier_data_batch2_20170221.csv
nstring/nanostring_classifier_data_batch3_20170307_updated_NCO.csv
nstring/nanostring_classifier_data_batch4_20170512.csv
array/OverlapSet/validation_gse.rds
array/OverlapSet/validation_tcga.rds
pipeline/3-post_processing/7-mapping_signatures_C2.R
external/Lasso_PAM100.csv
external/verhaakGS.csv
pipeline/4-nanostring_classifier/1-validate_nanostring.R
pipeline/4-nanostring_classifier/2-all_array_model.R
pipeline/4-nanostring_classifier/3-tcga_model.R
nstring/tcga_data_with_molsubtypes.rda
nstring/otta_exp_data.rdata
nstring/OTTA_Cohorts_20171103_AFFY_MA.csv
pipeline/5-gene_selection/0-gs_setup.R
nstring/predictions.csv
nstring/Subtype_Original.csv
pipeline/5-gene_selection/7-final_model.R
nstring/Nanostring_ARL-all samples-all gnes_20180607.xlsx
nstring/nanostring data_BRO HET.test_20160915.xlsx
nstring/nanostring data_cell lines_20160915.xlsx
nstring/nanostring data_LAX VAN OM.test_20160915.xlsx
nstring/nanostring data_ARL paired samples_20160915.xlsx
nstring/nanostring data_Rep.BIO samples_20160916.xlsx
nstring/nanostring data_replicates and Xsite_20160915.xlsx
pipeline/1-unsupervised/2-map_genes.Ruseshgnc/HGNC-Affymetrix-NanoString-OTTA_Map.csvpipeline/3-post_processing/4-validate_array.Rusesnstring/nanostring_classifier_data_batch1_20170217_updated.csvnstring/nanostring_classifier_data_batch2_20170221.csvnstring/nanostring_classifier_data_batch3_20170307_updated_NCO.csvnstring/nanostring_classifier_data_batch4_20170512.csvarray/OverlapSet/validation_gse.rdsarray/OverlapSet/validation_tcga.rdspipeline/3-post_processing/7-mapping_signatures_C2.Rusesexternal/Lasso_PAM100.csvexternal/verhaakGS.csvpipeline/4-nanostring_classifier/1-validate_nanostring.Rusesnstring/nanostring_classifier_data_batch1_20170217_updated.csvnstring/nanostring_classifier_data_batch2_20170221.csvnstring/nanostring_classifier_data_batch3_20170307_updated_NCO.csvnstring/nanostring_classifier_data_batch4_20170512.csvpipeline/4-nanostring_classifier/2-all_array_model.Rusesnstring/nanostring_classifier_data_batch1_20170217_updated.csvnstring/nanostring_classifier_data_batch2_20170221.csvnstring/nanostring_classifier_data_batch3_20170307_updated_NCO.csvnstring/nanostring_classifier_data_batch4_20170512.csvpipeline/4-nanostring_classifier/3-tcga_model.Rusesnstring/tcga_data_with_molsubtypes.rdanstring/otta_exp_data.rdatanstring/OTTA_Cohorts_20171103_AFFY_MA.csvpipeline/5-gene_selection/0-gs_setup.Rusesnstring/nanostring_classifier_data_batch1_20170217_updated.csvnstring/nanostring_classifier_data_batch2_20170221.csvnstring/nanostring_classifier_data_batch3_20170307_updated_NCO.csvnstring/nanostring_classifier_data_batch4_20170512.csvnstring/predictions.csvnstring/Subtype_Original.csvpipeline/5-gene_selection/7-final_model.Rusesnstring/Nanostring_ARL-all samples-all gnes_20180607.xlsxnstring/nanostring data_BRO HET.test_20160915.xlsxnstring/nanostring data_cell lines_20160915.xlsxnstring/nanostring data_LAX VAN OM.test_20160915.xlsxnstring/nanostring data_ARL paired samples_20160915.xlsxnstring/nanostring data_Rep.BIO samples_20160916.xlsxnstring/nanostring data_replicates and Xsite_20160915.xlsx