search

TaliaferroLab / LABRAT

Lightweight Alignment Based Resolution of Alternative Three Prime Ends
MIT License
8 stars 4 forks source link

about conditions #8

Closed lancy-liang closed 1 year ago

lancy-liang commented 1 year ago

My single-cell data has 9 clusters, but can I only input two clusters for the conditions? How can I input all 9 clusters?

taliaferrojm commented 1 year ago

Hi,

What is your goal? Are you looking to find genes that display significant differences in APA between any two clusters? This can be done by running each pairwise comparison separately.