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TalusBio
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nf-encyclopedia
A NextFlow pipeline for chromatogram library DIA proteomics workflows
Apache License 2.0
6
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4
forks
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Added Slack/Teams notifications
#43
wfondrie
opened
11 months ago
0
[Feature] Add Slack notification support
#42
wfondrie
opened
1 year ago
0
[WIP] Timstof support
#41
jspaezp
opened
1 year ago
1
Update encyclopedia to v2
#40
jspaezp
closed
1 year ago
1
[maintainance] Update encyclopedia to v2
#39
jspaezp
closed
1 year ago
1
Fixed MSstats bug
#38
wfondrie
closed
1 year ago
0
[Bug] MSstats drops some proteins
#37
wfondrie
closed
1 year ago
0
Bugfix/local test fix
#36
jspaezp
closed
1 year ago
0
added plattaform to dockerfile build
#35
jspaezp
closed
1 year ago
1
removed row names from msstats proteins output
#34
jspaezp
closed
1 year ago
4
Bugfix/non r names
#33
jspaezp
closed
1 year ago
2
Maintainance/docker dev env
#32
jspaezp
opened
1 year ago
3
Tests fail locally
#31
jspaezp
closed
1 year ago
3
Unable to access jarfile /code/encyclopedia.jar
#30
animesh
opened
1 year ago
15
[msstats] Remove row names from output
#29
wfondrie
closed
1 year ago
0
[msstats] Gracefully handle contrasts with invalid R column names
#28
wfondrie
closed
1 year ago
0
Fixed minor typos
#27
cia23
closed
2 years ago
0
Filter MSstats for accepted proteins, add tests, and improve code
#26
wfondrie
closed
2 years ago
1
Updated optional contrasts input
#25
wfondrie
closed
2 years ago
1
Add documentation page
#24
wfondrie
closed
2 years ago
0
Update MSstats integration
#23
wfondrie
closed
2 years ago
1
Overhauled the Docker image
#22
wfondrie
closed
2 years ago
0
Downgrade to OpenJDK 11
#21
wfondrie
closed
2 years ago
0
Prepare release v0.5.0
#20
wfondrie
closed
2 years ago
0
Add public docker images
#19
wfondrie
closed
2 years ago
0
Quality of life improvements
#18
wfondrie
closed
2 years ago
0
Add Documentation
#17
wfondrie
closed
2 years ago
1
Add email notifications on completion
#16
wfondrie
closed
2 years ago
1
Merge dev in to main
#15
wfondrie
closed
2 years ago
0
Merge latest updates for public release.
#14
wfondrie
closed
2 years ago
0
Dev
#13
ricomnl
closed
2 years ago
0
Nf core reformat
#12
ricomnl
closed
2 years ago
2
Find the difference between the EncyclopeDIA CLI and GUI
#11
wfondrie
closed
2 years ago
0
Removed storeDir and gzip features.txt
#10
wfondrie
closed
2 years ago
0
Add `-frag HCD` to EncyclopeDIA local searches
#9
wfondrie
closed
2 years ago
3
QC tool is taken care of outside of this repo by custoDIAn
#8
ricomnl
closed
2 years ago
1
[TODO] Add process capturing QC metrics
#7
ricomnl
closed
2 years ago
1
Global rework
#6
wfondrie
closed
2 years ago
1
Msstats
#5
ricomnl
closed
2 years ago
0
Change workflow inputs
#4
wfondrie
closed
2 years ago
0
Added storedir
#3
ricomnl
closed
2 years ago
0
Save EncyclopeDIA stdout and stderr to log file.
#2
wfondrie
closed
2 years ago
0
[TODO] Add documentation to the README
#1
wfondrie
closed
2 years ago
0