"read.beast" function not found

Taming-the-BEAST / FBD-tutorial

Dating Species Divergences with the Fossilized Birth-Death Process

5 stars 7 forks source link

"read.beast" function not found #5

Closed avvypaks closed 3 years ago

avvypaks commented 3 years ago

I am using the phyloch package to read my .tre file. But the "read.beast" function is not working. Is there any alternative to read my beast tree to make the geoscaled tree in the FBD model in R ?

laduplessis commented 3 years ago

Looks like phyloch is not supported anymore. Apparently using read.beast in the ips package solves the issue.

Keep in mind that the read.beast function is overloaded and occurs in many packages (treeio, phyloch, ips etc.) and not all packages will produce a tree structure that is compatible with downstream analyses in this tutorial's script.