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TaoYang-dev / hicrep

R package to evaluate the reproducibility of Hi-C data
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fastMeanFilter error #64

Closed tarak77 closed 4 years ago

tarak77 commented 4 years ago

Hey man, I was able to install hicrep from source and it works fine when h=0. But for nonzero values of h I get the following error:

Error in fastMeanFilter(as.matrix(mat1), h) : 
  could not find function "fastMeanFilter"

Any help?

TaoYang-dev commented 4 years ago

Could you please let me know which function gives you this error, get.scc()?

TaoYang-dev commented 4 years ago

Could you please let me know which function gives you this error, get.scc()?

TaoYang-dev commented 4 years ago

Could you please let me know which function gives you this error, get.scc()?

TaoYang-dev commented 4 years ago

Could you please let me know which function gives you this error, get.scc()?

TaoYang-dev commented 4 years ago

Could you please let me know which function gives you this error, get.scc()?

TaoYang-dev commented 4 years ago

Could you please let me know which function gives you this error, get.scc()?

On Wed, Sep 2, 2020 at 2:57 PM Tarak Shisode notifications@github.com wrote:

Hey man, I was able to install hicrep from source and it works fine when h=0. But for nonzero values of h I get the following error:

Error in fastMeanFilter(as.matrix(mat1), h) : could not find function "fastMeanFilter"

Any help?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/MonkeyLB/hicrep/issues/64, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEYS52YEX3GZEAWP4NVMHDDSD2ISXANCNFSM4QTRQXYQ .

tarak77 commented 4 years ago

Yes its get.scc()

TaoYang-dev commented 4 years ago

It seems to me your compiling wasn't successful. The fastmeanfilter() was written in C++. Can you try fast.mean.fitler() and see if it works?

On Thu, Sep 3, 2020 at 10:51 AM Tarak Shisode notifications@github.com wrote:

Yes its get.scc()

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/MonkeyLB/hicrep/issues/64#issuecomment-686546241, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEYS525BDZQQFVW7S4KMX73SD6UPHANCNFSM4QTRQXYQ .

tarak77 commented 4 years ago

Yes fast.mean.filter() seems to work. But not with get.scc() ??

tarak77 commented 4 years ago

I just replaced fastMeanFilter() with fast.mean.filter() in get.scc() function. It seems to work now. Thanks!