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TaoYang-dev / hicrep

R package to evaluate the reproducibility of Hi-C data
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could not find function "bed2mat" #69

Closed LHXqwq closed 1 year ago

LHXqwq commented 1 year ago

library(XML) library(hicrep) library(strawr) mat1 <- hic2mat("2-25-1.allValidPairs.hic", chromosome1 = "18", chromosome2 = "18", resol = 25000, method = "NONE") Error in hic2mat("2-25-1.allValidPairs.hic", chromosome1 = "18", chromosome2 = "18", : could not find function "hic2mat"

LHXqwq commented 1 year ago

conda install -c bioconda bioconductor-hicrep #could not find function "hic2mat" install.packages("hicrep_1.12.2.tar", repo = NULL, type = "source") #problem solved It seems that the version of bioconductor is inconsistent with the version on github, so there is an error.