Hi, thank you very much for this excellent tool. I encountered several problems (that I believe were caused by bugs) when I attempted to apply it to 10x single cell atac data. I managed to fix these bugs and I think it would be great to include these corrections into future releases.
First, I was unable to install it under python3.9, so I added conda-based instruction into README on how to install it using python3.6, it would save me half of hour, so I believe it is useful.
Second, I updated file name check to allow .tsv.gz files that are normally output by cellranger and modified functions to skip header lines (started with '#') in fragment files.
And finally, I fixed path to twoBitInfo_linux
Hi, thank you very much for this excellent tool. I encountered several problems (that I believe were caused by bugs) when I attempted to apply it to 10x single cell atac data. I managed to fix these bugs and I think it would be great to include these corrections into future releases.
First, I was unable to install it under python3.9, so I added conda-based instruction into README on how to install it using python3.6, it would save me half of hour, so I believe it is useful. Second, I updated file name check to allow .tsv.gz files that are normally output by cellranger and modified functions to skip header lines (started with '#') in fragment files. And finally, I fixed path to twoBitInfo_linux