Tarskin / HappyTools

A tool for the (high-throughput) processing of HPLC data.
Apache License 2.0
34 stars 16 forks source link

HappyTools batchprocess of non-txt files fails #43

Closed Tarskin closed 5 years ago

Tarskin commented 5 years ago

Describe the bug HappyTools' Batchprocess can take various file formats as an input for calibration (txt, arw and csv). However, the quantitation expects a 'txt' file but the calibration did not change the extension. Therefore, Batchprocess didn't quantify arw or csv files.

To Reproduce Steps to reproduce the behavior:

  1. Goto Batchprocess
  2. Perform calibration on folder with acccepted non-txt files
  3. Perform quantitation on the same folder
  4. Note that there are calibrated files with the original extension, yet the summary is empty

Expected behavior HappyTools should have changed the file format of the calibrated files to 'txt'.

Screenshots If applicable, add screenshots to help explain your problem.

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Additional context Bug uncovered by glycoaddict (Matthew Choo)

Tarskin commented 5 years ago

Fixed.