Error in batch processing

[AMPine]

I am getting this error in batch processing using the windows binary:

UnicodeEncodeError: 'ascii' codec can't encode character u'\xc2' in position 28: ordinal not in range(128)

Can you please help me?

Thanks in advance.

[Tarskin]

Would you be able to share the chromatogram file that yielded this error? as well as the reference files used?

[AMPine]

Dear Dr.Bas Jansen,

Thanks for your fast reply.

I am sending in annex the requested files, as well as, a powerpoint with the printscreen of the steps and errors of my workflow.

You will also encounter two folders:

• arw cal: is the chromatogram used for calibration (empower 3) corresponding to the external standard used for HPLC analysis;

• arw files to analyse: chromatograms I used for batch processing.

Let me know if you need any other information.

Thanks in advance.

Best,

Ângela Pinheiro

A 2023-01-30 10:11, Bas Jansen escreveu:

Would you be able to share the chromatogram file that yielded this error? as well as the reference files used?

-- Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. You are receiving this because you authored the thread.Message ID: @.***>

-- Angela Pinheiro Applied and Environmental Mycology (7.03) Instituto de Tecnologia Química e Biológica António Xavier (ITQB NOVA) Av. da República 2780-157 Oeiras Portugal

Phone:(+351) 21 446 97 26 http://www.aem.itqb.unl.pt/

Links:

[1] https://github.com/Tarskin/HappyTools/issues/58#issuecomment-1408333251 [2] https://github.com/notifications/unsubscribe-auth/A5QCEN3FM4AONZBWLMLSXP3WU6HTPANCNFSM6AAAAAAUIUYMQA

[AMPine]

I was not sure the files have been shared by email. I attached here in the supported format txt. Annotation and calibration were in .ref Calibration and Analysis (files I want to align and quantify) were in .arw

auto_annotation_T3.txt auto_cal_T3.txt calibration.txt

APinheiro_HappyTools_workflow.pptx

Analysis2.txt Analysis1.txt

[AMPine]

Would you be able to share the chromatogram file that yielded this error? as well as the reference files used?

Can you please let me know if you could ID the problem? Thanks in advance.

[Tarskin]

I haven't yet, I will be able to have a look this Sunday. Apologies for the delay.

On Thu, Feb 16, 2023, 3:30 PM AMPine @.***> wrote:

Would you be able to share the chromatogram file that yielded this error? as well as the reference files used?

Can you please let me know if you could ID the problem? Thanks in advance.

— Reply to this email directly, view it on GitHub https://github.com/Tarskin/HappyTools/issues/58#issuecomment-1433176123, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABBJ7BATPLTIVHRLRT6HEWLWXY2Y3ANCNFSM6AAAAAAUIUYMQA . You are receiving this because you commented.Message ID: @.***>

[Tarskin]

I suspect that you are having issues with the line endings and generic formatting, could you try to remove the top lines and the blank line at the end in your measurement files, using a tool such as notepad++? If that doesn't help, I would suggest a quick call to figure out what is going on, due to my suspicion that it is OS-related.

[AMPine]

So, we have tried your suggestions. Taking out the headlines did allows us to proceed with analyses. However, our output (summary file) is an empty file. Here goes a print screen from the command line. Can you help pls?

[Tarskin]

Can you confirm that you have no empty line at the end of the file?

On Mon, Feb 20, 2023, 8:05 PM AMPine @.***> wrote:

So, we have tried your suggestions. Taking out the headlines did allows us to proceed with analyses. However, our output (summary file) is an empty file. Here goes a print screen from the command line. Can you help pls?

[image: image] https://user-images.githubusercontent.com/123740727/220182641-02e916e4-fa28-4c5a-8d5e-fbf260709b75.png

— Reply to this email directly, view it on GitHub https://github.com/Tarskin/HappyTools/issues/58#issuecomment-1437439408, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABBJ7BANSOG3R5NPGVLDXP3WYO6A7ANCNFSM6AAAAAAUIUYMQA . You are receiving this because you commented.Message ID: @.***>

[AMPine]

Yes, we also deleted empty lines at the end of the file.