LaCyTools uses too much RAM when processing large LC-MS runs

Tarskin / LaCyTools

A high-throughput data extraction package for LC-MS data.

Apache License 2.0

9 stars 5 forks source link

LaCyTools uses too much RAM when processing large LC-MS runs #19

Closed Tarskin closed 7 years ago

Tarskin commented 7 years ago

The problem is created by the scipy.interpolate implementation of interp1d, which requires in excess of 16GB when processing a measurement which was ~ 4GB in size.

Tarskin commented 7 years ago

This bug was fixed by switching to a different method for the calculation of the spline.