TaxoDros / TaxoDros.github.io

TaxoDros - The database on Taxonomy of Drosophilidae. Compiled by Gerhard Bächli, Universität Zürich-Irchel, Institut für Evolutionsbiologie und Umweltforschung, Zürich, Switzerland. https://orcid.org/0000-0002-8402-176X
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check journal expansion - https://sandbox.zenodo.org/records/28835 has the abbreviated name Bull. Inst. Sci. Ind., Melb., #11

Closed jhpoelen closed 4 months ago

jhpoelen commented 4 months ago

example provided by @myrmoteras -

https://sandbox.zenodo.org/records/28835 has the abbreviated name Bull. Inst. Sci. Ind., Melb.,

expected to have the abbreviated name expanded.

jhpoelen commented 4 months ago

Previously, a citation string like

.Z Bull. Inst. Sci. Ind., Melb., 29:1-..

extracted the journal title as Bull. Inst. Sci. Ind. , the first text before the first comma.

Now, the text until the last comma is interpreted as the journal title.

Please do note that due to semi-structured nature of the journal text in the .Z tag, inconsistencies are likely. So, instead of adding complexities in the parsing of the journal string, I'd favor making the source data consistent . See e.g., #12 .

myrmoteras commented 4 months ago

ok - can we create a report and send to Bächli to correct it and get it back from him? How do you want to proceeed?

jhpoelen commented 4 months ago

@myrmoteras I've recorded data issues as github issues with the "data curation" tag on the https://github.com/TaxoDros/TaxoDros.github.io/issues tracker. These issues can be shared with Bächli after I finish up addressing this review round.

jhpoelen commented 4 months ago

Journal expansion related to Alexander, 1925 is now happening as expected in:

https://sandbox.zenodo.org/records/31731

(see attached screenshot)

image

related metadata:

{
  "metadata": {
    "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "taxodros-dros5",
    "referenceId": "alexander, 1925",
    "related_identifiers": [
      {
        "relation": "isAlternateIdentifier",
        "identifier": "urn:lsid:taxodros.uzh.ch:id:alexander%2C%201925"
      },
      {
        "relation": "isDerivedFrom",
        "identifier": "https://linker.bio/line:hash://md5/ff86b940567d278e50fa00672cf96629!/L1356-L1364"
      },
      {
        "relation": "isDerivedFrom",
        "identifier": "10.5281/zenodo.10593902"
      },
      {
        "relation": "isPartOf",
        "identifier": "https://www.taxodros.uzh.ch"
      },
      {
        "relation": "isAlternateIdentifier",
        "identifier": "hash://md5/c9d89f1ebc73de8e6e4ffbfb33b8df1f"
      }
    ],
    "creators": [
      {
        "name": "Alexander, W.B."
      }
    ],
    "publication_date": "1925",
    "title": "Natural Enemies of Prickly Pear and their Introduction into Australia.",
    "publication_type": "article",
    "journal_title": "Bulletin of the Institute of Science and Industry",
    "journal_volume": "29",
    "journal_pages": "1-",
    "taxodros:method": "ocr / part",
    "http://www.w3.org/ns/prov#wasDerivedFrom": "line:hash://md5/ff86b940567d278e50fa00672cf96629!/L1356-L1364",
    "references": [
      "Bächli, G. (2024). TaxoDros - The Database on Taxonomy of Drosophilidae hash://md5/4fa9eeed1c8cff2490483a48c718df02 hash://sha256/e05466f33c755f11bd1c2fa30eef2388bf24ff7989931bae1426daff0200af19 [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10593902"
    ],
    "filename": "Alexander, 1925.pdf",
    "upload_type": "publication",
    "communities": [
      {
        "identifier": "taxodros"
      },
      {
        "identifier": "biosyslit"
      }
    ],
    "description": "Uploaded by Plazi for TaxoDros. We do not have abstracts."
  }
}