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Tchanders / NetworkInference.jl

Methods for inferring undirected networks from data
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signal (7): Bus error on 5000+ genes #28

Open jlaw9 opened 5 years ago

jlaw9 commented 5 years ago

When running PIDC on a large dataset of 5000+ genes, I'm getting a signal (7): Bus error from Linux similar to the one reported here. Do you know if there's a way around this issue?

I'm running Julia v1.1 on Ubuntu 18.04.

Tchanders commented 5 years ago

Hi @jlaw9 - thanks for the feedback.

From the comment on the other task it looks as though your /dev/shm limit may be the problem. Inferring the network using PIDC creates a large shared array, which may be too large for your current limit. This article has information on checking and increasing the limit.

Let me know how you get on - we could add this to the README if it works.

ForrestLin0805 commented 4 years ago

it works after resize the dev/shm