Summarize step breaks

[Tom-van-Woudenberg]

See here: https://github.com/TeachBooks/mirror_teachbook_manual/actions/runs/9254044731/job/25455107454

[Tom-van-Woudenberg]

In the previous action run, main didn't include teachbooks. now in does include it So maybe the issue is in an error statement generated from that branch?

[Tom-van-Woudenberg]

This is the error report from jupyter book build book:

C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\examples/example_gumbel_stripped.ipynb:10002: WARNING: Document headings start at H2, not H1 [myst.header]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\examples/example_quiz_interactive_stripped.ipynb:10002: WARNING: Document headings start at H2, not H1 [myst.header]
WARNING: unknown directive or role name: cite:p
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/prob-design/overview.md:4: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
WARNING: unknown directive or role name: cite:t
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/prob-design/overview.md:45: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/prob-design/overview.md:45: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/prob-design/overview.md:45: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/references.md:2: WARNING: Unknown directive type: 'bibliography' [myst.directive_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/definition.md:50: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/definition.md:50: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/definition.md:50: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/definition.md:67: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/risk-curves.md:36: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/risk-curves.md:36: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/risk-curves.md:36: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-analysis/risk-curves.md:41: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\risk-curves.md:72: WARNING: image file not readable: external/Nested-Books/book/external/MUDE/book/figures/ex_FN_curve_step_01_py.svg
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\risk-curves.md:87: WARNING: image file not readable: external/Nested-Books/book/external/MUDE/book/figures/ex_FN_curve_step_02_py.svg
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\risk-curves.md:102: WARNING: image file not readable: external/Nested-Books/book/external/MUDE/book/figures/ex_FN_curve_step_03_py.svg
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\cost-benefit.md:119: WARNING: image file not readable: external/Nested-Books/book/external/MUDE/book/figures/present_value_py.svg
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-evaluation/example-dike-height.md:6: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-evaluation/example-dike-height.md:107: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-evaluation/example-dike-height.md:109: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
WARNING: unknown directive or role name: cite:p
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-evaluation/example-dike-height.md:109: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
WARNING: unknown directive or role name: cite:p
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-evaluation/example-dike-height.md:109: WARNING: Unknown interpreted text role "cite:p". [myst.role_unknown]
WARNING: unknown directive or role name: cite:t
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/risk-evaluation/example-dike-height.md:111: WARNING: Unknown interpreted text role "cite:t". [myst.role_unknown]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:: WARNING: image file not readable: external/Nested-Books/book/external/MUDE/book/figures/risk_types_py.svg
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\template\book\intro.md:2: WARNING: duplicate label intro, other instance in C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/book/intro.md
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/template/book/references.md:2: WARNING: Unknown directive type: 'bibliography' [myst.directive_unknown]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features/overview.md:: WARNING: toctree contains reference to nonexisting document 'features/remove_from_publish' [etoc.ref]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows/branches.md:: WARNING: Duplicate explicit target name: "new-branch-button".
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:: WARNING: image file not readable: figures/Pull_VS.png
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows/repositories.md:6: WARNING: Non-consecutive header level increase; H1 to H3 [myst.header]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows/repositories.md:: WARNING: Duplicate explicit target name: "gitlab-clone".
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<unknown>:68: WARNING: duplicate label vscode-welcome, other instance in C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows/branches.md
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looking for now-outdated files... none found
pickling environment... done
checking consistency... C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\examples/Unconstrained_optimization_stripped.ipynb: WARNING: document isn't included in any toctree
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\examples/example_gumbel_stripped.ipynb: WARNING: document isn't included in any toctree
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external/Nested-Books/book/external/MUDE/LICENSE.md: WARNING: document isn't included in any toctree
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done
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done
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\basic-features\hypothesis.md:43: WARNING: undefined label: 'remove_from_publish'
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C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\definition.md:33: WARNING: Failed to create a cross reference. Any number is not assigned: fn-curve-simple
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\definition.md:43: WARNING: Failed to create a cross reference. Any number is not assigned: risk-curve-baecher
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\definition.md:55: WARNING: Failed to create a cross reference. Any number is not assigned: risk-hazard
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\definition.md:86: WARNING: Failed to create a cross reference. Any number is not assigned: risk-definitions
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\risk-curves.md:29: WARNING: Failed to create a cross reference. Any number is not assigned: risk-curve-baecher-2
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\risk-curves.md:39: WARNING: Failed to create a cross reference. Any number is not assigned: risk-curve-baecher-2
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\steps.md:16: WARNING: Failed to create a cross reference. Any number is not assigned: id1
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-analysis\steps.md:75: WARNING: Failed to create a cross reference. Any number is not assigned: risk-damage-types
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\cost-benefit.md:6: WARNING: Failed to create a cross reference. Any number is not assigned: costs-and-benefits
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\cost-benefit.md:105: WARNING: Failed to create a cross reference. Any number is not assigned: present-value
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:24: WARNING: Failed to create a cross reference. Any number is not assigned: decision-tree-blank
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:71: WARNING: Failed to create a cross reference. Any number is not assigned: decision-tree-example
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:71: WARNING: Failed to create a cross reference. Any number is not assigned: ex-market-outcomes
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:120: WARNING: Failed to create a cross reference. Any number is not assigned: example-river-excavation
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:130: WARNING: Failed to create a cross reference. Any number is not assigned: example-river-excavation-2
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:157: WARNING: Failed to create a cross reference. Any number is not assigned: example-river-excavation
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:160: WARNING: Failed to create a cross reference. Any number is not assigned: example-river-excavation
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\decision.md:188: WARNING: Failed to create a cross reference. Any number is not assigned: example-river-excavation-3
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\econ-optimization.md:39: WARNING: Failed to create a cross reference. Any number is not assigned: economic-optimum
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\econ-optimization.md:56: WARNING: Failed to create a cross reference. Any number is not assigned: economic-optimum
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\example-dike-height.md:34: WARNING: Failed to create a cross reference. Any number is not assigned: dike-heightening-schematic
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\example-dike-height.md:97: WARNING: Failed to create a cross reference. Any number is not assigned: dike-rings
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\example-dike-height.md:113: WARNING: Failed to create a cross reference. Any number is not assigned: periodic-investments
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:6: WARNING: Failed to create a cross reference. Any number is not assigned: risk-evaluation
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:38: WARNING: Failed to create a cross reference. Any number is not assigned: death-probability
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:75: WARNING: Failed to create a cross reference. Any number is not assigned: individual-risk-life-expectancy
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:107: WARNING: Failed to create a cross reference. Any number is not assigned: limit-line
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:133: WARNING: Failed to create a cross reference. Any number is not assigned: risk-matrix
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:148: WARNING: Failed to create a cross reference. Any number is not assigned: risk-contour
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:179: WARNING: Failed to create a cross reference. Any number is not assigned: individual-risk-criteria
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:181: WARNING: Failed to create a cross reference. Any number is not assigned: fn-limit
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:193: WARNING: Failed to create a cross reference. Any number is not assigned: risk-curve-baecher
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:280: WARNING: Failed to create a cross reference. Any number is not assigned: exp-val-std-dev-two-activities
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\book\risk-evaluation\safety-standards.md:338: WARNING: Failed to create a cross reference. Any number is not assigned: combined-risk-criteria
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\Nested-Books\book\external\MUDE\unused\utility.md:12: WARNING: Failed to create a cross reference. Any number is not assigned: utility-example
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\external\template\book\credits.md:13: WARNING: 'myst' cross-reference target not found: 'url' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\creating_basic_HTML_elements.md:60: WARNING: Lexing literal_block '         function linspace(start, end, resolution) {\n             var spacing = [];\n             // Go through a for-loop\n             var i;\n             for (i = 0; i < resolution; i++) {\n                 spacing.push(start + (end - start) * i / (resolution - 1))\n             }\n             return spacing; // The function returns the linspace between p1 and p2\n         }\n         \n         function standard_Gaussian_pdf(x) {\n             mean = 0;\n             std = 1;\n             // Create a dummy variable\n             var result = [];\n             normalize = math.dotDivide(\n                 1,\n                 math.sqrt(\n                     math.dotMultiply(\n                         math.dotMultiply(\n                             2,\n                             math.PI),\n                         math.pow(\n                             std,\n                             2))));\n         \n             var i;\n             for (i = 0; i < x.length; i++) {\n                 // Evaluate the first element of the Gaussian mixture\n                 expon = math.exp(\n                     -math.dotDivide(\n                         math.pow(\n                             x[i] - mean,\n                             2),\n                         math.dotMultiply(\n                             2,\n                             math.pow(\n                                 std,\n                                 2))))\n                 temp = math.dotMultiply(\n                     normalize,\n                     expon)\n                 result.push(temp)\n             }\n             return result\n         }\n         \n         function standard_Gaussian_cdf(x) {\n             mean = 0;\n             std = 1;\n             // Create a dummy variable\n             var result = [];\n             for (i = 0; i < x.length; i++) {\n                 // Evaluate the first element of the Gaussian mixture\n                 temp = 0.5 * (1 + math.erf(x[i] /math.sqrt(2)))\n                 result.push(temp)\n             }\n             return result\n         }\n' as "html" resulted in an error at token: ';'. Retrying in relaxed mode.
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\creating_basic_HTML_elements.md:192: WARNING: Lexing literal_block '         // Evaluate the normal pdf\n         var x = linspace(-3, 3, 201);\n         var pdf = standard_Gaussian_pdf(x);\n         \n         svg.append("circle")\n             .attr("r", 10 * height / 600)\n             .attr("cx", xScale_pdf(0))\n             .attr("cy", yScale_pdf(standard_Gaussian_pdf([0])))\n             .attr("fill", "#666666") // "#c3e7f9"\n             .attr("stroke-width", 5 * height / 600)\n             .attr("id", "marker_pdf");\n         \n         // Get the data for the path\n         var data_pdf = [];\n         for (i = 0; i < x.length; i++) {\n             data_pdf.push({\n                 x: x[i],\n                 y: pdf[i]\n             })\n         }\n         \n         \n         var valueline_pdf = d3.svg.line()\n             .x(function(d) {\n                 return xScale_pdf(d.x);\n             })\n             .y(function(d) {\n                 return yScale_pdf(d.y);\n             });\n         \n         svg.append("path")\n             .attr("d", valueline_pdf(data_pdf))\n             .attr("fill", "none")\n             .attr("stroke-width", 3 * height / 600)\n             .attr("stroke", "#666666")\n             .attr("id", "thatline")\n         \n         var fill_x, fill_pdf\n         var xpos = 0;\n         fill_x = linspace(x_limits[0], xpos, 201);\n         fill_pdf = standard_Gaussian_pdf(fill_x);\n         fill_x.push(xpos)\n         fill_x.push(x_limits[0])\n         fill_pdf.push(0)\n         fill_pdf.push(0)\n         var data_fill = [];\n         for (i = 0; i < fill_x.length; i++) {\n             data_fill.push({\n                 x: fill_x[i],\n                 y: fill_pdf[i]\n             })\n         }\n         svg.append("path")\n             .attr("d", valueline_pdf(data_fill))\n             .attr("fill", "#999999")\n             .attr("stroke", "None")\n             .attr("id", "fill")\n             .lower()\n' as "html" resulted in an error at token: ';'. Retrying in relaxed mode.
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\creating_basic_HTML_elements.md:255: WARNING: Lexing literal_block '         // Define a subplot for the standard normal\n         const y_limits_cdf = [0, 1];\n         const window_x_cdf = [width * 0.585, width * 0.985];\n         const window_y_cdf = [height * 0.1, height * 0.89];\n         \n         // Get scaling functions for the x scale and the y_scale\n         const xScale_cdf = d3.scaleLinear()\n             .domain([x_limits[0], x_limits[1]])\n             .range(window_x_cdf)\n         const xScale_cdf_inverse = d3.scaleLinear()\n             .domain(window_x_cdf)\n             .range([x_limits[0], x_limits[1]])\n         const yScale_cdf = d3.scaleLinear()\n             .domain([y_limits_cdf[0], y_limits_cdf[1]])\n             .range([window_y_cdf[1], window_y_cdf[0]])\n         \n         // Draw the x axis\n         svg\n             .append("g")\n             .attr("transform", "translate(0," + window_y_cdf[1].toString() + ")")\n             .call(d3.axisBottom(xScale_cdf).ticks(5))\n             .style("font-size", (12 * width / 600).toString() + "px")\n         svg.append("text")\n             .attr("transform",\n                 "translate(" + (math.mean(window_x_cdf)).toString() + "," + (height * 0.995).toString() + ")")\n             .style("text-anchor", "middle")\n             .text("x")\n             .style("font-family", "arial")\n             .style("font-size", (12 * width / 600).toString() + "px")\n         \n         // Draw the y axis\n         svg\n             .append("g")\n             .attr("transform", "translate(" + (window_x_cdf[0]).toString() + ",0)")\n             .attr("id", "mainxaxis")\n             .call(d3.axisLeft(yScale_cdf))\n             .style("font-size", (12 * width / 600).toString() + "px");\n         //.call(d3.axisLeft(yScale).tickFormat(""));\n         svg.append("text")\n             .attr("transform",\n                 "translate(" + (width * 0.525).toString() + "," + (math.mean(window_y_cdf)).toString() + ") rotate(270)")\n             .style("text-anchor", "middle")\n             .text("cumulative probability")\n             .style("font-size", (12 * width / 600).toString() + "px")\n         \n         // Draw the subplot label\n         svg.append("text")\n             .attr("transform",\n                 "translate(" + ((window_x_cdf[1] - window_x_cdf[0])/2 + window_x_cdf[0]).toString() + "," + (window_y_cdf[0]).toString() + ")")\n             .style("text-anchor", "middle")\n             .text("cdf")\n             .style("font-size", (16 * width / 600).toString() + "px")\n         \n         // Evaluate the normal pdf\n         var cdf = standard_Gaussian_cdf(x);\n         \n         svg.append("circle")\n             .attr("r", 10 * height / 600)\n             .attr("cx", xScale_cdf(0))\n             .attr("cy", yScale_cdf(standard_Gaussian_cdf([0])))\n             .attr("fill", "#666666") // "#c3e7f9"\n             .attr("stroke-width", 5 * height / 600)\n             .attr("id", "marker_cdf");\n         \n         // Get the data for the path\n         var data_cdf = [];\n         for (i = 0; i < x.length; i++) {\n             data_cdf.push({\n                 x: x[i],\n                 y: cdf[i]\n             })\n         }\n         \n         var valueline_cdf = d3.svg.line()\n             .x(function(d) {\n                 return xScale_cdf(d.x);\n             })\n             .y(function(d) {\n                 return yScale_cdf(d.y);\n             });\n         \n         svg.append("path")\n             .attr("d", valueline_cdf(data_cdf))\n             .attr("fill", "none")\n             .attr("stroke-width", 3 * height / 600)\n             .attr("stroke", "#666666") //"#4794c1")\n             .attr("id", "thatline")\n         \n         svg.append(\'line\')\n           .attr(\'x1\', window_x_cdf[0])\n           .attr(\'x2\', window_x_cdf[1])\n           .attr(\'y1\', yScale_cdf(standard_Gaussian_cdf([0])))\n           .attr(\'y2\', yScale_cdf(standard_Gaussian_cdf([0])))\n           .attr(\'stroke\', \'#000000\')\n           .attr("stroke-width", 3 * height / 600)\n           .style("stroke-dasharray", ((10 * height / 600).toString()+","+(5 * height / 600).toString()))\n           .attr("id","line_cdf")\n           .lower();\n' as "html" resulted in an error at token: ';'. Retrying in relaxed mode.
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\creating_basic_HTML_elements.md:370: WARNING: Lexing literal_block '         // Shift the marker around on mouseover; restrict it to the contour\n         var movex, movey, xpos\n         \n         svg\n             .on("mousemove", function() {\n                 // Get the current mouseover coordinates\n                 movex = d3.event.x;\n                 movey = d3.event.y;\n         \n                 \n                 if (movex >= window_x_pdf[0] && movex <= window_x_pdf[1]) {\n                 \txpos = xScale_pdf_inverse(movex);\n                 \n                   d3.select("#marker_pdf")\n                       .attr("cx", xScale_pdf(xpos))\n                       .attr("cy", yScale_pdf(standard_Gaussian_pdf([xpos])));\n                   d3.select("#marker_cdf")\n                       .attr("cx", xScale_cdf(xpos))\n                       .attr("cy", yScale_cdf(standard_Gaussian_cdf([xpos])));\n                       \n                   fill_x = linspace(x_limits[0], xpos, 201);\n                   fill_pdf = standard_Gaussian_pdf(fill_x);\n                   fill_x.push(xpos)\n                   fill_x.push(x_limits[0])\n                   fill_pdf.push(0)\n                   fill_pdf.push(0)\n                   var data_fill = [];\n                   for (i = 0; i < fill_x.length; i++) {\n                       data_fill.push({\n                           x: fill_x[i],\n                           y: fill_pdf[i]\n                       })\n                   }\n                   d3.select("#fill")\n                       .attr("d", valueline_pdf(data_fill))\n                       .lower();\n                       \n                       \n                   d3.select("#line_cdf")\n                     .attr(\'y1\', yScale_cdf(standard_Gaussian_cdf([xpos])))\n                     .attr(\'y2\', yScale_cdf(standard_Gaussian_cdf([xpos])))\n                     .lower();\n                   \n                 } else if (movex >= window_x_cdf[0] && movex <= window_x_cdf[1]) {\n                 \txpos = xScale_cdf_inverse(movex);\n                   d3.select("#marker_pdf")\n                       .attr("cx", xScale_pdf(xpos))\n                       .attr("cy", yScale_pdf(standard_Gaussian_pdf([xpos])));\n                   d3.select("#marker_cdf")\n                       .attr("cx", xScale_cdf(xpos))\n                       .attr("cy", yScale_cdf(standard_Gaussian_cdf([xpos])));\n                       \n                   fill_x = linspace(x_limits[0], xpos, 201);\n                   fill_pdf = standard_Gaussian_pdf(fill_x);\n                   fill_x.push(xpos)\n                   fill_x.push(x_limits[0])\n                   fill_pdf.push(0)\n                   fill_pdf.push(0)\n                   var data_fill = [];\n                   for (i = 0; i < fill_x.length; i++) {\n                       data_fill.push({\n                           x: fill_x[i],\n                           y: fill_pdf[i]\n                       })\n                   }\n                   d3.select("#fill")\n                       .attr("d", valueline_pdf(data_fill))\n                   d3.select("#fill_cdf")\n                     .attr(\'y\', yScale_cdf(standard_Gaussian_cdf([xpos])))\n                     .attr(\'height\', window_y_cdf[1] - yScale_cdf(standard_Gaussian_cdf([xpos])))\n                     .lower();\n                     \n                   d3.select("#line_cdf")\n                     .attr(\'y1\', yScale_cdf(standard_Gaussian_cdf([xpos])))\n                     .attr(\'y2\', yScale_cdf(standard_Gaussian_cdf([xpos])))\n                     .lower();\n                       \n                 }\n         \n             });\n         \n      </script>\n   </body>\n</html>\n' as "html" resulted in an error at token: '&'. Retrying in relaxed mode.
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\github_deploy.md:8: WARNING: 'myst' cross-reference target not found: '../workflows/githubtemplate.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\python_interactivity.md:9: WARNING: 'myst' cross-reference target not found: './live_code.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\features\widgets.ipynb:10004: WARNING: 'myst' cross-reference target not found: 'live_code.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\installation-and-setup\git-setup_local.md:132: WARNING: 'myst' cross-reference target not found: '/jupyter-book-manual/book/workflows/overview.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:24: WARNING: undefined label: 'new-branch-button'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:32: WARNING: undefined label: 'new-branch-menu'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:40: WARNING: undefined label: 'new-branch-repo'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:154: WARNING: Failed to create a cross reference. Any number is not assigned: vscode-welcome
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:220: WARNING: undefined label: 'new-branch-button'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:228: WARNING: undefined label: 'new-branch-menu'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:236: WARNING: undefined label: 'new-branch-repo'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:319: WARNING: undefined label: 'new-branch-button'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:327: WARNING: undefined label: 'new-branch-menu'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:335: WARNING: undefined label: 'new-branch-repo'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\branches.md:395: WARNING: undefined label: 'stage-commit-push'
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\edit_book.md:356: WARNING: 'myst' cross-reference target not found: '/book/installation-and-setup/jupyter-book-setup.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\edit_book.md:418: WARNING: 'myst' cross-reference target not found: '/book/installation-and-setup/jupyter-book-setup.html#view-the-book-using-a-local-webserver' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\repositories.md:20: WARNING: 'myst' cross-reference target not found: '/book/installation-and-setup/git-setup_local.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\repositories.md:41: WARNING: 'myst' cross-reference target not found: '/book/installation-and-setup/git-setup_local.md' [myst.xref_missing]
C:\Users\tomvanwoudenbe\Git\jupyter-book-manual\book\workflows\repositories.md:63: WARNING: Failed to create a cross reference. Any number is not assigned: vscode-welcome

[Tom-van-Woudenberg]

Okay I think this is because of the lines with a (. I fixed this in the book