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TeamCOMPAS / COMPAS

COMPAS rapid binary population synthesis code
http://compas.science
MIT License
64 stars 64 forks source link

Update docs with CI info, remove redundant docs, git-workflow (Close #862, #1009, #1105) #1110

Open avivajpeyi opened 2 months ago

avivajpeyi commented 2 months ago

Close #862, #1009, #1105

avivajpeyi commented 1 month ago

Noticed a bunch of errors: 

building [linkcheck]: targets for 127 source files that are out of date
updating environment: [new config] 127 added, 0 changed, 0 removed
[WARNING] Duplicate link reference '[//]' at line 9 column 1HE_paper_tutorial/CHE_evolution_demo                                                                                     
[WARNING] Duplicate link reference '[//]' at line 9 column 1HE_paper_tutorial/CHE_evolution_demo_ANSWERS                                                                             
reading sources... [100%] pages/whats-new                                                                                                                                            
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/Developer guide/git-workflow.rst:21: ERROR: Unexpected indentation.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/Developer guide/git-workflow.rst:22: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:272: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:275: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:280: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:356: CRITICAL: Title level inconsistent:

Example 1: plotting BH masses
-----------------------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:690: CRITICAL: Title level inconsistent:

Question 4:
-----------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:737: CRITICAL: Title level inconsistent:

Selecting CHE binaries:
-----------------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:843: CRITICAL: Title level inconsistent:

Question 5:
-----------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:850: CRITICAL: Title level inconsistent:

Hint: A useful line of code is: np.in1d(), below is an example of how it works
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:957: CRITICAL: Title level inconsistent:

Question 6:
-----------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:1022: CRITICAL: Title level inconsistent:

Question 7:
-----------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:1214: CRITICAL: Title level inconsistent:

Extra Question 8:
-----------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:1275: CRITICAL: Title level inconsistent:

EXTRA using the CHE data:
-------------------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:1349: CRITICAL: Title level inconsistent:

Documentation
-------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:1354: CRITICAL: Title level inconsistent:

Contact
-------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb:1359: CRITICAL: Title level inconsistent:

Example of additional excersizes
--------------------------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:268: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:271: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:276: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:599: CRITICAL: Title level inconsistent:

Answer 2:
---------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:617: CRITICAL: Title level inconsistent:

NS-NS
-----
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:708: CRITICAL: Title level inconsistent:

BH-NS
-----
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:799: CRITICAL: Title level inconsistent:

BH-BH
-----
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:991: CRITICAL: Title level inconsistent:

Answer 3:
---------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1076: CRITICAL: Title level inconsistent:

Question 4:
-----------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1098: CRITICAL: Title level inconsistent:

Answer 4:
---------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1149: CRITICAL: Title level inconsistent:

Selecting CHE binaries:
-----------------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1255: CRITICAL: Title level inconsistent:

Question 5:
-----------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1964: CRITICAL: Title level inconsistent:

Example of additional excersizes
--------------------------------
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:459: ERROR: Document or section may not begin with a transition.
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:12: WARNING: duplicate label this is a tutorial that can be used for live teaching/demos, it should fill about ~1hr of class, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:38: WARNING: duplicate label definitions:, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:134: WARNING: duplicate label we can view what parameters are stored by again using the command .keys(), other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:208: WARNING: duplicate label the meaning of all parameters and files are described here https://compas.readthedocs.io/en/latest/pages/user%20guide/compas%20output/standard-logfiles.html, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:265: WARNING: duplicate label question 1, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:567: WARNING: duplicate label question 2:, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:932: WARNING: duplicate label question 3:, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1318: WARNING: duplicate label answer 5, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1464: WARNING: duplicate label answer 6, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1739: WARNING: duplicate label answer 7, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1795: WARNING: duplicate label answer 8, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1935: WARNING: duplicate label extra material:, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo_ANSWERS.ipynb:1947: WARNING: duplicate label compact object mergers: population astrophysics & statistics, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/DataAnalysis.ipynb:115: WARNING: File not found: 'pages/User guide/Post-processing/notebooks/WorkingWithHDF5.ipynb'
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:330: CRITICAL: Title level inconsistent:

Example 1: random uniform spin for each Black Hole (BH)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:373: CRITICAL: Title level inconsistent:

Example 2: all BH spin have a fixed value
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:439: CRITICAL: Title level inconsistent:

Example 3: second formed black hole obtains spin through tides at Wolf-Rayet (WR)-BH stage
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:506: CRITICAL: Title level inconsistent:

Example 4: Geneva model based spin (birth BH spin)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:586: CRITICAL: Title level inconsistent:

Example 5: MESA-model based birth BH spin
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:906: CRITICAL: Title level inconsistent:

Example 3: second formed black hole obtains spin through tides at Wolf-Rayet (WR)-BH stage
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:979: CRITICAL: Title level inconsistent:

Example 4: Geneva model based spin (birth BH spin)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:1071: CRITICAL: Title level inconsistent:

Example 5: MESA-model based birth BH spin
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth.ipynb:1177: CRITICAL: Title level inconsistent:

Example: Bavera
~~~~~~~~~~~~~~~
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/configuration.rst:5: WARNING: duplicate label run-time configuration, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/COMPAS output/standard-logfiles-annotations.rst
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/configuration.rst:20: WARNING: duplicate label compile-time configuration, other instance in /home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/COMPAS output/standard-logfiles-annotations.rst
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/avaj040/Documents/projects/COMPAS/online-docs/pages/Developer guide/git-workflow.rst: WARNING: document isn't included in any toctree
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo.ipynb: WARNING: document isn't included in any toctree
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/how-to-cite.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [100%] pages/whats-new                                                                                                                                             
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/User guide/configuration.rst:27: WARNING: unknown document: '../Getting started/building-COMPAS'
/home/avaj040/Documents/projects/COMPAS/online-docs/pages/whats-new.rst:23: WARNING: unknown document: '../"User guide"/timestep-files'

(pages/User guide/Pre-processing/pre-processing-sampling: line  115) broken    getting_started.md - 
(pages/User guide/Pre-processing/pre-processing-sampling: line   82) broken    compasHPC.md - 
(pages/User guide/docker: line  288) broken    FROM - 
(pages/User guide/Post-processing/notebooks/DataAnalysis: line  115) broken    ./WorkingWithHDF5.ipynb - 
(pages/references: line    2) ok        https://arxiv.org/abs/1110.1726
(pages/references: line    2) ok        https://arxiv.org/abs/1610.04417
(pages/references: line    2) ok        https://arxiv.org/abs/1009.5400
(pages/references: line    2) ok        https://arxiv.org/abs/1307.0959
(pages/how-to-cite: line   16) redirect  http://github.com/TeamCOMPAS/COMPAS - permanently to https://github.com/TeamCOMPAS/COMPAS
(pages/references: line    2) ok        https://arxiv.org/abs/1704.01352
(pages/references: line    2) ok        https://arxiv.org/abs/1805.07974
(pages/references: line    2) ok        https://arxiv.org/abs/1711.06287
(pages/references: line    2) ok        https://arxiv.org/abs/1905.00910
(pages/references: line    2) ok        https://arxiv.org/abs/1904.02821
(pages/User guide/Post-processing/notebooks/CosmicIntegration: line   75) ok        https://arxiv.org/abs/1906.08136
(pages/references: line    2) ok        https://arxiv.org/abs/2010.00002
(pages/references: line    2) ok        https://arxiv.org/abs/2109.10352
(pages/references: line    2) ok        https://arxiv.org/abs/2204.13025
(pages/references: line    2) ok        https://arxiv.org/abs/astro-ph/0001295
(pages/references: line    2) ok        https://arxiv.org/abs/astro-ph/0007034
(pages/references: line    2) ok        https://arxiv.org/abs/1912.02415
(pages/references: line    2) ok        https://arxiv.org/abs/astro-ph/9703016
(pages/references: line    2) ok        https://arxiv.org/abs/astro-ph/0511811
(pages/User guide/Running COMPAS/running-via-docker: line   38) ok        https://aws.amazon.com/ec2/
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line   18) redirect  https://arxiv.org/pdf/2010.00002.pdf - permanently to http://arxiv.org/pdf/2010.00002
(           index: line   48) ok        https://choosealicense.com/licenses/mit/
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line  212) ok        https://compas.readthedocs.io/en/latest/pages/User%20guide/COMPAS%20output/standard-logfiles.html
(pages/User guide/Running COMPAS/running-via-docker: line   39) redirect  https://cloud.google.com/compute - with Found to https://cloud.google.com/products/compute
(pages/Developer guide/Developer build/docker-developer: line   96) redirect  https://docs.docker.com/engine/reference/builder/ - with Found to https://docs.docker.com/reference/dockerfile/
(pages/Developer guide/Developer build/docker-developer: line  102) redirect  https://docs.docker.com/engine/reference/builder/#cmd - with Found to https://docs.docker.com/reference/dockerfile/#cmd
(pages/Developer guide/Developer build/docker-developer: line  100) redirect  https://docs.docker.com/engine/reference/builder/#copy - with Found to https://docs.docker.com/reference/dockerfile/#copy
(pages/Getting started/getting-started: line   39) ok        https://developer.apple.com/xcode/
(pages/Developer guide/Developer build/docker-developer: line  101) redirect  https://docs.docker.com/engine/reference/builder/#env - with Found to https://docs.docker.com/reference/dockerfile/#env
(pages/Developer guide/Developer build/docker-developer: line   99) redirect  https://docs.docker.com/engine/reference/builder/#run - with Found to https://docs.docker.com/reference/dockerfile/#run
(pages/Developer guide/Developer build/docker-developer: line   97) redirect  https://docs.docker.com/engine/reference/builder/#from - with Found to https://docs.docker.com/reference/dockerfile/#from
(pages/Developer guide/Developer build/docker-developer: line   92) redirect  https://docs.docker.com/engine/reference/commandline/build/ - permanently to https://docs.docker.com/reference/cli/docker/image/build/
(pages/Developer guide/Developer build/docker-developer: line   98) redirect  https://docs.docker.com/engine/reference/builder/#workdir - with Found to https://docs.docker.com/reference/dockerfile/#workdir
(pages/Developer guide/Developer build/docker-developer: line   93) redirect  https://docs.docker.com/engine/reference/commandline/tag/ - permanently to https://docs.docker.com/reference/cli/docker/image/tag/
(pages/User guide/Running COMPAS/running-via-docker-running: line  156) ok        https://docs.docker.com/engine/reference/run/
(pages/User guide/Running COMPAS/running-via-docker-running: line  152) broken    https://docs.docker.com/engine/reference/run/#clean-up---rm - Anchor 'clean-up---rm' not found
(pages/User guide/Running COMPAS/running-via-docker-running: line  157) broken    https://docs.docker.com/engine/reference/run/#detached--d - Anchor 'detached--d' not found
(pages/User guide/Running COMPAS/running-via-docker-running: line  155) broken    https://docs.docker.com/engine/reference/run/#env-environment-variables - Anchor 'env-environment-variables' not found
(pages/User guide/Running COMPAS/running-via-docker-running: line  153) broken    https://docs.docker.com/engine/reference/run/#foreground - Anchor 'foreground' not found
(pages/User guide/Running COMPAS/running-via-docker-running: line  154) ok        https://docs.docker.com/storage/bind-mounts/
(pages/references: line    2) broken    https://doi.org/10.1046/j.1365-8711.2000.03426.x - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/315/3/543/972062
(pages/references: line    2) redirect  https://doi.org/10.1038/ncomms14906 - with Found to https://www.nature.com/articles/ncomms14906
(           index: line   19) ok        https://compas.science/index.html
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line 1346) ok        https://compas.science/
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line 1352) ok        https://compas.science/docs
(pages/references: line    2) redirect  https://doi.org/10.1088/0004-637X/749/1/91 - with Found to https://iopscience.iop.org/article/10.1088/0004-637X/749/1/91
(pages/references: line    2) redirect  https://doi.org/10.1088/0004-637X/743/1/49 - with Found to https://iopscience.iop.org/article/10.1088/0004-637X/743/1/49
(pages/references: line    2) broken    https://doi.org/10.1051/0004-6361/201322198 - 403 Client Error: Forbidden for url: https://www.aanda.org/10.1051/0004-6361/201322198
(pages/references: line    2) redirect  https://doi.org/10.1086/521026 - with Found to https://iopscience.iop.org/article/10.1086/521026
(pages/references: line    2) broken    https://doi.org/10.1051/0004-6361/201629420 - 403 Client Error: Forbidden for url: https://www.aanda.org/10.1051/0004-6361/201629420
(pages/references: line    2) broken    https://doi.org/10.1093/mnras/sty2463 - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/481/3/4009/5092622
(pages/references: line    2) broken    https://doi.org/10.1093/mnras/staa756 - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/494/2/1587/5809972
(pages/references: line    2) broken    https://doi.org/10.1093/mnras/stab1291 - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/505/1/663/6273653
(pages/references: line    2) broken    https://doi.org/10.1093/mnras/sty908 - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/477/4/4685/4969691
(pages/references: line    2) broken    https://doi.org/10.1093/mnras/stz2558 - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/490/4/5228/5575207
(pages/User guide/COMPAS output/standard-logfiles-record-specification-stellar: line 1370) ok        https://en.wikipedia.org/wiki/Mean_anomaly
(pages/User guide/COMPAS output/standard-logfiles-record-specification-stellar: line 2131) ok        https://en.wikipedia.org/wiki/True
(pages/User guide/Pre-processing/pre-processing-yaml: line    6) ok        https://en.wikipedia.org/wiki/YAML
(pages/references: line    2) broken    https://doi.org/10.1093/mnras/stz2840 - 403 Client Error: Forbidden for url: https://academic.oup.com/mnras/article/490/3/3740/5588621
(pages/references: line    2) redirect  https://doi.org/10.3847/1538-4365/ac416c - with Found to https://validate.perfdrive.com/fb803c746e9148689b3984a31fccd902/?ssa=9900d2ce-fe0b-454d-86ea-52d09c93c9f0&ssb=67978277244&ssc=https%3A%2F%2Fiopscience.iop.org%2Farticle%2F10.3847%2F1538-4365%2Fac416c&ssi=b0047bc5-8427-4023-9e5d-91cfb227cdbc&ssk=support@shieldsquare.com&ssm=39043197241772886107592527195471&ssn=2bf45b5c070916c3359266a61b215cb920e7c92deb7b-7883-42ba-b68a4b&sso=4d0f1207-f092060d943ff089e4a87bf0659d62b2ea117126877e71b5&ssp=60572828891715208774171526559146754&ssq=09373822976042304452329760824452617754951&ssr=MTMwLjIxNi4zNy4xMzQ=&sst=Sphinx/6.1.3%20requests/2.28.2%20python/3.8.10&ssu=&ssv=&ssw=&ssx=eyJyZCI6ImlvcC5vcmciLCJ1em14IjoiN2Y5MDAwMmQ2NmRkZTEtMmZkYS00ZWIwLThmMGMtZDc4ODk1MzczMjNmMS0xNzE1MjI5NzYwNDI3MC0wOGYwZTI3ODkzMjcyNGYzMTAiLCJfX3V6bWYiOiI3ZjYwMDAyMDI2OGUzYy00NDNkLTQyZTQtODZiZi1hNjRiZDY0NzI0YTAxNzE1MjI5NzYwNDI3MC1jNjRlZDk1ZDdjMzE0YTY2MTAifQ==
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(pages/Developer guide/Developer build/docker-developer: line   78) ok        https://gcc.gnu.org/onlinedocs/gcc/x86-Options.html
(pages/Developer guide/Developer build/COMPAS-local-build: line   68) ok        https://gcc.gnu.org/onlinedocs/gcc/Optimize-Options.html
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line 1344) broken    https://github.com/TeamCOMPAS/COMPAS/blob/Documentation/COMPAS_Documentation.pdf - 404 Client Error: Not Found for url: https://github.com/TeamCOMPAS/COMPAS/blob/Documentation/COMPAS_Documentation.pdf
(pages/Developer guide/git-workflow: line   19) ok        https://github.com/TeamCOMPAS/COMPAS/blob/dev/.github/workflows/precommit-checks.yml
(pages/Developer guide/git-workflow: line   22) ok        https://github.com/TeamCOMPAS/COMPAS/blob/dev/.github/workflows/compas-compile-ci.yml
( pages/whats-new: line  181) ok        https://github.com/TeamCOMPAS/COMPAS/issues/743
( pages/whats-new: line  143) ok        https://github.com/TeamCOMPAS/COMPAS/issues/596
( pages/whats-new: line  177) ok        https://github.com/TeamCOMPAS/COMPAS/issues/745
( pages/whats-new: line  169) ok        https://github.com/TeamCOMPAS/COMPAS/issues/746
( pages/whats-new: line  160) ok        https://github.com/TeamCOMPAS/COMPAS/issues/773
( pages/whats-new: line  156) ok        https://github.com/TeamCOMPAS/COMPAS/issues/783
( pages/whats-new: line  111) ok        https://github.com/TeamCOMPAS/COMPAS/issues/825
( pages/whats-new: line  173) ok        https://github.com/TeamCOMPAS/COMPAS/issues/761
(pages/Developer guide/Developer build/docker-developer: line   94) ok        https://github.com/features/actions
(pages/Developer guide/git-workflow: line    4) ok        https://github.com/git-guides
(pages/Developer guide/Developer build/docker-developer: line   12) ok        https://github.com/TeamCOMPAS/COMPAS/tree/dev
(pages/User guide/Post-processing/notebooks/CosmicIntegration: line  837) ok        https://github.com/TeamCOMPAS/COMPAS/tree/8af87e8e84568da11133deae034e23aee92c68e9
( pages/whats-new: line   24) ok        https://github.com/TeamCOMPAS/COMPAS/pull/1052
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line 1357) ok        https://groups.google.com/forum/#!members/compas-user
(pages/User guide/Pre-processing/pre-processing-sampling: line  108) ok        https://github.com/lokiysh/stroopwafel
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line 1344) ok        https://img.shields.io/badge/Documentation-latest-orange.svg?style=flat
(pages/Developer guide/Developer build/docker-developer: line   95) broken    https://help.github.com/en/actions/getting-started-with-github-actions/core-concepts-for-github-actions#runner - Anchor 'runner' not found
(pages/User guide/Running COMPAS/running-via-docker: line   41) broken    https://stackoverflow.com/questions/23735149/what-is-the-difference-between-a-docker-image-and-a-container#:~:text=An%20instance%20of%20an%20image,of%20layers%20as%20you%20describe.&text=You%20can%20see%20all%20your,an%20image%20is%20a%20container - Anchor ':~:text=An%20instance%20of%20an%20image,of%20layers%20as%20you%20describe.&text=You%20can%20see%20all%20your,an%20image%20is%20a%20container' not found
(pages/User guide/Running COMPAS/running-via-docker: line   42) ok        https://hub.docker.com/
-rate limited-   https://hub.docker.com/_/ubuntu | sleeping...
(pages/Developer guide/Developer build/docker-developer: line    8) ok        https://hub.docker.com/u/teamcompas
(pages/User guide/docker: line   49) ok        https://www.docker.com/
(pages/User guide/Running COMPAS/running-via-docker: line   25) ok        https://www.docker.com/products/docker-desktop
(pages/User guide/Post-processing/notebooks/CosmicIntegration: line  206) ok        https://raw.githubusercontent.com/TeamCOMPAS/COMPAS/dev/misc/examples/Tutorials/SFRD_cartoon.png
(pages/User guide/Running COMPAS/running-via-docker: line   40) ok        https://www.docker.com/resources/what-container
(pages/User guide/docker: line   22) broken    https://stackoverflow.com/questions/23735149/what-is-the-difference-between-a-docker-image-and-a-container#:~:text=An%20instance%20of%20an%20image,of%20layers%20as%20you%20describe.&text=You%20can%20see%20all%20your,an%20image%20is%20a%20container. - Anchor ':~:text=An%20instance%20of%20an%20image,of%20layers%20as%20you%20describe.&text=You%20can%20see%20all%20your,an%20image%20is%20a%20container.' not found
(pages/User guide/Post-processing/notebooks/CosmicIntegration: line   91) redirect  https://zenodo.org/communities/compas/?page=1&size=20 - with Found to https://zenodo.org/communities/compas/records?page=1&size=20
(pages/User guide/Post-processing/hdf5/WorkingWithHDF5: line   11) ok        https://www.hdfgroup.org/solutions/hdf5/
(pages/Developer guide/Services/Logging and debugging/Base-level logging/services-base-level-logging-func-start: line   55) ok        https://www.hdfgroup.org/
(pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth: line   92) redirect  https://zenodo.org/record/5178777 - permanently to https://zenodo.org/records/5178777
(pages/Developer guide/Developer build/docker-developer: line   23) ok        https://www.atlassian.com/continuous-delivery/principles/continuous-integration-vs-delivery-vs-deployment
(pages/User guide/Post-processing/CHE_paper_tutorial/CHE_evolution_demo: line   22) redirect  https://zenodo.org/record/5595426 - permanently to https://zenodo.org/records/5595426
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(pages/User guide/Post-processing/notebooks/spin_prescriptions/calculate_black_hole_spin_pop_synth: line   92) redirect  https://zenodo.org/record/5651073 - permanently to https://zenodo.org/records/5651073
(pages/Developer guide/Developer build/docker-developer: line   37) ok        https://hub.docker.com/_/ubuntu
ilyamandel commented 1 month ago

@avivajpeyi , is this ready for review?

avivajpeyi commented 1 month ago

Hey @ilyamandel -- apologies, haven't finished this up yet!