Including changing the parameters list to Simulation on views.py and on simulation_main_script.py
loading correct input pdbs ids, save them
running the script to move the molecules, save the new files
merge the pdb files, save the new file
run the fixpdb on the merged filem save the new file
run the OpenMM script builder and save the result
run pymol with the OpenMM script created
Including changing the parameters list to Simulation on views.py and on simulation_main_script.py
loading correct input pdbs ids, save them running the script to move the molecules, save the new files merge the pdb files, save the new file run the fixpdb on the merged filem save the new file run the OpenMM script builder and save the result run pymol with the OpenMM script created